1,675 research outputs found
Everything you always wanted to know about the parameterized complexity of Subgraph Isomorphism (but were afraid to ask)
Given two graphs H and G, the Subgraph Isomorphism problem asks if H is isomorphic to a subgraph of G. While NP-hard in general, algorithms exist for various parameterized versions of the problem. However, the literature contains very little guidance on which combinations of parameters can or cannot be exploited algorithmically. Our goal is to systematically investigate the possible parameterized algorithms that can exist for Subgraph Isomorphism.
We develop a framework involving 10 relevant parameters for each of H and G (such as treewidth, pathwidth, genus, maximum degree, number of vertices, number of components, etc.), and ask if an algorithm with running time f1_(p_1,p_2,...,p_l).n^f_2(p_(l+1),...,p_k) exists, where each of p_1,...,p_k is one of the 10 parameters depending only on H or G. We show that all the questions arising in this framework are answered by a set of 11 maximal positive results (algorithms) and a set of 17 maximal negative results (hardness proofs); some of these results already appear in the literature, while others are new in this paper.
On the algorithmic side, our study reveals for example that an unexpected combination of bounded degree, genus, and feedback vertex set number of G gives rise to a highly nontrivial algorithm for Subgraph Isomorphism. On the hardness side, we present W[1]-hardness proofs under extremely restricted conditions, such as when H is a bounded-degree tree of constant pathwidth and G is a planar graph of bounded pathwidth
Reduction Techniques for Graph Isomorphism in the Context of Width Parameters
We study the parameterized complexity of the graph isomorphism problem when
parameterized by width parameters related to tree decompositions. We apply the
following technique to obtain fixed-parameter tractability for such parameters.
We first compute an isomorphism invariant set of potential bags for a
decomposition and then apply a restricted version of the Weisfeiler-Lehman
algorithm to solve isomorphism. With this we show fixed-parameter tractability
for several parameters and provide a unified explanation for various
isomorphism results concerned with parameters related to tree decompositions.
As a possibly first step towards intractability results for parameterized graph
isomorphism we develop an fpt Turing-reduction from strong tree width to the a
priori unrelated parameter maximum degree.Comment: 23 pages, 4 figure
Fixed-parameter tractable canonization and isomorphism test for graphs of bounded treewidth
We give a fixed-parameter tractable algorithm that, given a parameter and
two graphs , either concludes that one of these graphs has treewidth
at least , or determines whether and are isomorphic. The running
time of the algorithm on an -vertex graph is ,
and this is the first fixed-parameter algorithm for Graph Isomorphism
parameterized by treewidth.
Our algorithm in fact solves the more general canonization problem. We namely
design a procedure working in time that, for a
given graph on vertices, either concludes that the treewidth of is
at least , or: * finds in an isomorphic-invariant way a graph
that is isomorphic to ; * finds an isomorphism-invariant
construction term --- an algebraic expression that encodes together with a
tree decomposition of of width .
Hence, the isomorphism test reduces to verifying whether the computed
isomorphic copies or the construction terms for and are equal.Comment: Full version of a paper presented at FOCS 201
Induced Minor Free Graphs: Isomorphism and Clique-width
Given two graphs and , we say that contains as an induced
minor if a graph isomorphic to can be obtained from by a sequence of
vertex deletions and edge contractions. We study the complexity of Graph
Isomorphism on graphs that exclude a fixed graph as an induced minor. More
precisely, we determine for every graph that Graph Isomorphism is
polynomial-time solvable on -induced-minor-free graphs or that it is
GI-complete. Additionally, we classify those graphs for which
-induced-minor-free graphs have bounded clique-width. These two results
complement similar dichotomies for graphs that exclude a fixed graph as an
induced subgraph, minor, or subgraph.Comment: 16 pages, 5 figures. An extended abstract of this paper previously
appeared in the proceedings of the 41st International Workshop on
Graph-Theoretic Concepts in Computer Science (WG 2015
On the Hardness and Inapproximability of Recognizing Wheeler Graphs
In recent years several compressed indexes based on variants of the Burrows-Wheeler transformation have been introduced. Some of these are used to index structures far more complex than a single string, as was originally done with the FM-index [Ferragina and Manzini, J. ACM 2005]. As such, there has been an increasing effort to better understand under which conditions such an indexing scheme is possible. This has led to the introduction of Wheeler graphs [Gagie et al., Theor. Comput. Sci., 2017]. Gagie et al. showed that de Bruijn graphs, generalized compressed suffix arrays, and several other BWT related structures can be represented as Wheeler graphs, and that Wheeler graphs can be indexed in a way which is space efficient. Hence, being able to recognize whether a given graph is a Wheeler graph, or being able to approximate a given graph by a Wheeler graph, could have numerous applications in indexing. Here we resolve the open question of whether there exists an efficient algorithm for recognizing if a given graph is a Wheeler graph. We present:
- The problem of recognizing whether a given graph G=(V,E) is a Wheeler graph is NP-complete for any edge label alphabet of size sigma >= 2, even when G is a DAG. This holds even on a restricted, subset of graphs called d-NFA\u27s for d >= 5. This is in contrast to recent results demonstrating the problem can be solved in polynomial time for d-NFA\u27s where d <= 2. We also show the recognition problem can be solved in linear time for sigma =1;
- There exists an 2^{e log sigma + O(n + e)} time exact algorithm where n = |V| and e = |E|. This algorithm relies on graph isomorphism being computable in strictly sub-exponential time;
- We define an optimization variant of the problem called Wheeler Graph Violation, abbreviated WGV, where the aim is to remove the minimum number of edges in order to obtain a Wheeler graph. We show WGV is APX-hard, even when G is a DAG, implying there exists a constant C >= 1 for which there is no C-approximation algorithm (unless P = NP). Also, conditioned on the Unique Games Conjecture, for all C >= 1, it is NP-hard to find a C-approximation;
- We define the Wheeler Subgraph problem, abbreviated WS, where the aim is to find the largest subgraph which is a Wheeler Graph (the dual of the WGV). In contrast to WGV, we prove that the WS problem is in APX for sigma=O(1);
The above findings suggest that most problems under this theme are computationally difficult. However, we identify a class of graphs for which the recognition problem is polynomial time solvable, raising the open question of which parameters determine this problem\u27s difficulty
Finding Induced Subgraphs via Minimal Triangulations
Potential maximal cliques and minimal separators are combinatorial objects
which were introduced and studied in the realm of minimal triangulations
problems including Minimum Fill-in and Treewidth. We discover unexpected
applications of these notions to the field of moderate exponential algorithms.
In particular, we show that given an n-vertex graph G together with its set of
potential maximal cliques Pi_G, and an integer t, it is possible in time |Pi_G|
* n^(O(t)) to find a maximum induced subgraph of treewidth t in G; and for a
given graph F of treewidth t, to decide if G contains an induced subgraph
isomorphic to F. Combined with an improved algorithm enumerating all potential
maximal cliques in time O(1.734601^n), this yields that both problems are
solvable in time 1.734601^n * n^(O(t)).Comment: 14 page
Complexity of Grundy coloring and its variants
The Grundy number of a graph is the maximum number of colors used by the
greedy coloring algorithm over all vertex orderings. In this paper, we study
the computational complexity of GRUNDY COLORING, the problem of determining
whether a given graph has Grundy number at least . We also study the
variants WEAK GRUNDY COLORING (where the coloring is not necessarily proper)
and CONNECTED GRUNDY COLORING (where at each step of the greedy coloring
algorithm, the subgraph induced by the colored vertices must be connected).
We show that GRUNDY COLORING can be solved in time and WEAK
GRUNDY COLORING in time on graphs of order . While GRUNDY
COLORING and WEAK GRUNDY COLORING are known to be solvable in time
for graphs of treewidth (where is the number of
colors), we prove that under the Exponential Time Hypothesis (ETH), they cannot
be solved in time . We also describe an
algorithm for WEAK GRUNDY COLORING, which is therefore
\fpt for the parameter . Moreover, under the ETH, we prove that such a
running time is essentially optimal (this lower bound also holds for GRUNDY
COLORING). Although we do not know whether GRUNDY COLORING is in \fpt, we
show that this is the case for graphs belonging to a number of standard graph
classes including chordal graphs, claw-free graphs, and graphs excluding a
fixed minor. We also describe a quasi-polynomial time algorithm for GRUNDY
COLORING and WEAK GRUNDY COLORING on apex-minor graphs. In stark contrast with
the two other problems, we show that CONNECTED GRUNDY COLORING is
\np-complete already for colors.Comment: 24 pages, 7 figures. This version contains some new results and
improvements. A short paper based on version v2 appeared in COCOON'1
Simultaneous Feedback Vertex Set: A Parameterized Perspective
Given a family of graphs , a graph , and a positive integer
, the -Deletion problem asks whether we can delete at most
vertices from to obtain a graph in . -Deletion
generalizes many classical graph problems such as Vertex Cover, Feedback Vertex
Set, and Odd Cycle Transversal. A graph ,
where the edge set of is partitioned into color classes, is called
an -edge-colored graph. A natural extension of the
-Deletion problem to edge-colored graphs is the
-Simultaneous -Deletion problem. In the latter problem, we
are given an -edge-colored graph and the goal is to find a set
of at most vertices such that each graph , where and , is in . In this work, we
study -Simultaneous -Deletion for being the
family of forests. In other words, we focus on the -Simultaneous
Feedback Vertex Set (-SimFVS) problem. Algorithmically, we show that,
like its classical counterpart, -SimFVS parameterized by is
fixed-parameter tractable (FPT) and admits a polynomial kernel, for any fixed
constant . In particular, we give an algorithm running in time and a kernel with vertices. The
running time of our algorithm implies that -SimFVS is FPT even when
. We complement this positive result by showing that for
, where is the number of vertices in the input graph,
-SimFVS becomes W[1]-hard. Our positive results answer one of the open
problems posed by Cai and Ye (MFCS 2014)
Graph matching: relax or not?
We consider the problem of exact and inexact matching of weighted undirected
graphs, in which a bijective correspondence is sought to minimize a quadratic
weight disagreement. This computationally challenging problem is often relaxed
as a convex quadratic program, in which the space of permutations is replaced
by the space of doubly-stochastic matrices. However, the applicability of such
a relaxation is poorly understood. We define a broad class of friendly graphs
characterized by an easily verifiable spectral property. We prove that for
friendly graphs, the convex relaxation is guaranteed to find the exact
isomorphism or certify its inexistence. This result is further extended to
approximately isomorphic graphs, for which we develop an explicit bound on the
amount of weight disagreement under which the relaxation is guaranteed to find
the globally optimal approximate isomorphism. We also show that in many cases,
the graph matching problem can be further harmlessly relaxed to a convex
quadratic program with only n separable linear equality constraints, which is
substantially more efficient than the standard relaxation involving 2n equality
and n^2 inequality constraints. Finally, we show that our results are still
valid for unfriendly graphs if additional information in the form of seeds or
attributes is allowed, with the latter satisfying an easy to verify spectral
characteristic
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