A Decision Support System for Liver Diseases Prediction: Integrating Batch Processing, Rule-Based Event Detection and SPARQL Query

Liver diseases pose a significant global health burden, impacting a substantial number of individuals and exerting substantial economic and social consequences. Rising liver problems are considered a fatal disease in many countries, such as Egypt, Molda, etc. The objective of this study is to construct a predictive model for liver illness using Basic Formal Ontology (BFO) and detection rules derived from a decision tree algorithm. Based on these rules, events are detected through batch processing using the Apache Jena framework. Based on the event detected, queries can be directly processed using SPARQL. To make the ontology operational, these Decision Tree (DT) rules are converted into Semantic Web Rule Language (SWRL). Using this SWRL in the ontology for predicting different types of liver disease with the help of the Pellet and Drool inference engines in Protege Tools, a total of 615 records are taken from different liver diseases. After inferring the rules, the result can be generated for the patient according to the DT rules, and other patient-related details along with different precautionary suggestions can be obtained based on these results. Combining query results of batch processing and ontology-generated results can give more accurate suggestions for disease prevention and detection. This work aims to provide a comprehensive approach that is applicable for liver disease prediction, rich knowledge graph representation, and smart querying capabilities. The results show that combining RDF data, SWRL rules, and SPARQL queries for analysing and predicting liver disease can help medical professionals to learn more about liver diseases and make a Decision Support System (DSS) for health care

Combining ontologies and rules with clinical archetypes

Al igual que otros campos que dependen en gran medida de las funcionalidades ofrecidas por las tecnologías de la información y las comunicaciones (IT), la biomedicina y la salud necesitan cada vez más la implantación de normas y mecanismos ampliamente aceptados para el intercambio de datos, información y conocimiento. Dicha necesidad de compatibilidad e interoperabilidad va más allá de las cuestiones sintácticas y estructurales, pues la interoperabilidad semántica es también requerida. La interoperabilidad a nivel semántico es esencial para el soporte computarizado de alertas, flujos de trabajo y de la medicina basada en evidencia cuando contamos con la presencia de sistemas heterogéneos de Historia Clínica Electrónica (EHR). El modelo de arquetipos clínicos respaldado por el estándar CEN/ISO EN13606 y la fundación openEHR ofrece un mecanismo para expresar las estructuras de datos clínicos de manera compartida e interoperable. El modelo ha ido ganando aceptación en los últimos años por su capacidad para definir conceptos clínicos basados en un Modelo de Referencia común. Dicha separación a dos capas permite conservar la heterogeneidad de las implementaciones de almacenamiento a bajo nivel, presentes en los diferentes sistemas de EHR. Sin embargo, los lenguajes de arquetipos no soportan la representación de reglas clínicas ni el mapeo a ontologías formales, ambos elementos fundamentales para alcanzar la interoperabilidad semántica completa pues permiten llevar a cabo el razonamiento y la inferencia a partir del conocimiento clínico existente. Paralelamente, es reconocido el hecho de que la World Wide Web presenta requisitos análogos a los descritos anteriormente, lo cual ha fomentado el desarrollo de la Web Semántica. El progreso alcanzado en este terreno, con respecto a la representación del conocimiento y al razonamiento sobre el mismo, es combinado en esta tesis con los modelos de EHR con el objetivo de mejorar el enfoque de los arquetipos clínicos y ofrecer funcionalidades que se corresponden con nivel más alto de interoperabilidad semántica. Concretamente, la investigación que se describe a continuación presenta y evalúa un enfoque para traducir automáticamente las definiciones expresadas en el lenguaje de definición de arquetipos de openEHR (ADL) a una representación formal basada en lenguajes de ontologías. El método se implementa en la plataforma ArchOnt, que también es descrita. A continuación se estudia la integración de dichas representaciones formales con reglas clínicas, ofreciéndose un enfoque para reutilizar el razonamiento con instancias concretas de datos clínicos. Es importante ver como el acto de compartir el conocimiento clínico expresado a través de reglas es coherente con la filosofía de intercambio abierto fomentada por los arquetipos, a la vez que se extiende la reutilización a proposiciones de conocimiento declarativo como las utilizadas en las guías de práctica clínica. De esta manera, la tesis describe una técnica de mapeo de arquetipos a ontologías, para luego asociar reglas clínicas a la representación resultante. La traducción automática también permite la conexión formal de los elementos especificados en los arquetipos con conceptos clínicos equivalentes provenientes de otras fuentes como son las terminologías clínicas. Dichos enlaces fomentan la reutilización del conocimiento clínico ya representado, así como el razonamiento y la navegación a través de distintas ontologías clínicas. Otra contribución significativa de la tesis es la aplicación del enfoque mencionado en dos proyectos de investigación y desarrollo clínico, llevados a cabo en combinación con hospitales universitarios de Madrid. En la explicación se incluyen ejemplos de las aplicaciones más representativas del enfoque como es el caso del desarrollo de sistemas de alertas orientados a mejorar la seguridad del paciente. No obstante, la traducción automática de arquetipos clínicos a lenguajes de ontologías constituye una base común para la implementación de una amplia gama de actividades semánticas, razonamiento y validación, evitándose así la necesidad de aplicar distintos enfoques ad-hoc directamente sobre los arquetipos para poder satisfacer las condiciones de cada contexto

Context Aware Computing for The Internet of Things: A Survey

As we are moving towards the Internet of Things (IoT), the number of sensors deployed around the world is growing at a rapid pace. Market research has shown a significant growth of sensor deployments over the past decade and has predicted a significant increment of the growth rate in the future. These sensors continuously generate enormous amounts of data. However, in order to add value to raw sensor data we need to understand it. Collection, modelling, reasoning, and distribution of context in relation to sensor data plays critical role in this challenge. Context-aware computing has proven to be successful in understanding sensor data. In this paper, we survey context awareness from an IoT perspective. We present the necessary background by introducing the IoT paradigm and context-aware fundamentals at the beginning. Then we provide an in-depth analysis of context life cycle. We evaluate a subset of projects (50) which represent the majority of research and commercial solutions proposed in the field of context-aware computing conducted over the last decade (2001-2011) based on our own taxonomy. Finally, based on our evaluation, we highlight the lessons to be learnt from the past and some possible directions for future research. The survey addresses a broad range of techniques, methods, models, functionalities, systems, applications, and middleware solutions related to context awareness and IoT. Our goal is not only to analyse, compare and consolidate past research work but also to appreciate their findings and discuss their applicability towards the IoT.Comment: IEEE Communications Surveys & Tutorials Journal, 201

Improving data management through automatic information extraction model in ontology for road asset management

lRoads are a critical component of transportation infrastructure, and their effective maintenance is paramount in ensuring their continued functionality and safety. This research proposes a novel information management approach based on state-of-the-art deep learning models and ontologies. The approach can automatically extract, integrate, complete, and search for project knowledge buried in unstructured text documents. The approach on the one hand facilitates implementation of modern management approaches, i.e., advanced working packaging to delivery success road management projects, on the other hand improves information management practices in the construction industry

A Semantic Information Management Approach for Improving Bridge Maintenance based on Advanced Constraint Management

Bridge rehabilitation projects are important for transportation infrastructures. This research proposes a novel information management approach based on state-of-the-art deep learning models and ontologies. The approach can automatically extract, integrate, complete, and search for project knowledge buried in unstructured text documents. The approach on the one hand facilitates implementation of modern management approaches, i.e., advanced working packaging to delivery success bridge rehabilitation projects, on the other hand improves information management practices in the construction industry

A SEMANTIC BASED POLICY MANAGEMENT FRAMEWORK FOR CLOUD COMPUTING ENVIRONMENTS

Cloud computing paradigm has gained tremendous momentum and generated intensive interest. Although security issues are delaying its fast adoption, cloud computing is an unstoppable force and we need to provide security mechanisms to ensure its secure adoption. In this dissertation, we mainly focus on issues related to policy management and access control in the cloud. Currently, users have to use diverse access control mechanisms to protect their data when stored on the cloud service providers (CSPs). Access control policies may be specified in different policy languages and heterogeneity of access policies pose significant problems.An ideal policy management system should be able to work with all data regardless of where they are stored. Semantic Web technologies when used for policy management, can help address the crucial issues of interoperability of heterogeneous CSPs. In this dissertation, we propose a semantic based policy management framework for cloud computing environments which consists of two main components, namely policy management and specification component and policy evolution component. In the policy management and specification component, we first introduce policy management as a service (PMaaS), a cloud based policy management framework that give cloud users a unified control point for specifying authorization policies, regardless of where the data is stored. Then, we present semantic based policy management framework which enables users to specify access control policies using semantic web technologies and helps address heterogeneity issues of cloud computing environments. We also model temporal constraints and restrictions in GTRBAC using OWL and show how ontologies can be used to specify temporal constraints. We present a proof of concept implementation of the proposed framework and provide some performance evaluation. In the policy evolution component, we propose to use role mining techniques to deal with policy evolution issues and present StateMiner, a heuristic algorithm to find an RBAC state as close as possible to both the deployed RBAC state and the optimal state. We also implement the proposed algorithm and perform some experiments to demonstrate its effectiveness

Computerization of workflows, guidelines and care pathways: a review of implementation challenges for process-oriented health information systems

There is a need to integrate the various theoretical frameworks and formalisms for modeling clinical guidelines, workflows, and pathways, in order to move beyond providing support for individual clinical decisions and toward the provision of process-oriented, patient-centered, health information systems (HIS). In this review, we analyze the challenges in developing process-oriented HIS that formally model guidelines, workflows, and care pathways. A qualitative meta-synthesis was performed on studies published in English between 1995 and 2010 that addressed the modeling process and reported the exposition of a new methodology, model, system implementation, or system architecture. Thematic analysis, principal component analysis (PCA) and data visualisation techniques were used to identify and cluster the underlying implementation ‘challenge’ themes. One hundred and eight relevant studies were selected for review. Twenty-five underlying ‘challenge’ themes were identified. These were clustered into 10 distinct groups, from which a conceptual model of the implementation process was developed. We found that the development of systems supporting individual clinical decisions is evolving toward the implementation of adaptable care pathways on the semantic web, incorporating formal, clinical, and organizational ontologies, and the use of workflow management systems. These architectures now need to be implemented and evaluated on a wider scale within clinical settings

Automatic Geospatial Data Conflation Using Semantic Web Technologies

Duplicate geospatial data collections and maintenance are an extensive problem across Australia government organisations. This research examines how Semantic Web technologies can be used to automate the geospatial data conflation process. The research presents a new approach where generation of OWL ontologies based on output data models and presenting geospatial data as RDF triples serve as the basis for the solution and SWRL rules serve as the core to automate the geospatial data conflation processes

Knowledge-driven Artificial Intelligence in Steelmaking: Towards Industry 4.0

With the ongoing emergence of the Fourth Industrial Revolution, often referred to as Indus-try 4.0, new innovations, concepts, and standards are reshaping manufacturing processes and production, leading to intelligent cyber-physical systems and smart factories. Steel production is one important manufacturing process that is undergoing this digital transfor-mation. Realising this vision in steel production comes with unique challenges, including the seamless interoperability between diverse and complex systems, the uniformity of het-erogeneous data, and a need for standardised human-to-machine and machine-to-machine communication protocols. To address these challenges, international standards have been developed, and new technologies have been introduced and studied in both industry and academia. However, due to the vast quantity, scale, and heterogeneous nature of industrial data and systems, achieving interoperability among components within the context of Industry 4.0 remains a challenge, requiring the need for formal knowledge representation capabilities to enhance the understanding of data and information. In response, semantic-based technologies have been proposed as a method to capture knowledge from data and resolve incompatibility conflicts within Industry 4.0 scenarios. We propose utilising fundamental Semantic Web concepts, such as ontologies and knowledge graphs, specifically to enhance semantic interoperability, improve data integration, and standardise data across heterogeneous systems within the context of steelmaking. Addition-ally, we investigate ongoing trends that involve the integration of Machine Learning (ML)techniques with semantic technologies, resulting in the creation of hybrid models. These models capitalise on the strengths derived from the intersection of these two AI approaches.Furthermore, we explore the need for continuous reasoning over data streams, presenting preliminary research that combines ML and semantic technologies in the context of data streams. In this thesis, we make four main contributions: (1) We discover that a clear under-standing of semantic-based asset administration shells, an international standard within the RAMI 4.0 model, was lacking, and provide an extensive survey on semantic-based implementations of asset administration shells. We focus on literature that utilises semantic technologies to enhance the representation, integration, and exchange of information in an industrial setting. (2) The creation of an ontology, a semantic knowledge base, which specifically captures the cold rolling processes in steelmaking. We demonstrate use cases that leverage these semantic methodologies with real-world industrial data for data access, data integration, data querying, and condition-based maintenance purposes. (3) A frame-work demonstrating one approach for integrating machine learning models with semantic technologies to aid decision-making in the domain of steelmaking. We showcase a novel approach of applying random forest classification using rule-based reasoning, incorporating both meta-data and external domain expert knowledge into the model, resulting in improved knowledge-guided assistance for the human-in-the-loop during steelmaking processes. (4) The groundwork for a continuous data stream reasoning framework, where both domain expert knowledge and random forest classification can be dynamically applied to data streams on the fly. This approach opens up possibilities for real-time condition-based monitoring and real-time decision support for predictive maintenance applications. We demonstrate the adaptability of the framework in the context of dynamic steel production processes. Our contributions have been validated on both real-world data sets with peer-reviewed conferences and journals, as well as through collaboration with domain experts from our industrial partners at Tata Steel

Situation Interpretation for Knowledge- and Model Based Laparoscopic Surgery

To manage the influx of information into surgical practice, new man-machine interaction methods are necessary to prevent information overflow. This work presents an approach to automatically segment surgeries into phases and select the most appropriate pieces of information for the current situation. This way, assistance systems can adopt themselves to the needs of the surgeon and not the other way around