Duality of Graphical Models and Tensor Networks

In this article we show the duality between tensor networks and undirected graphical models with discrete variables. We study tensor networks on hypergraphs, which we call tensor hypernetworks. We show that the tensor hypernetwork on a hypergraph exactly corresponds to the graphical model given by the dual hypergraph. We translate various notions under duality. For example, marginalization in a graphical model is dual to contraction in the tensor network. Algorithms also translate under duality. We show that belief propagation corresponds to a known algorithm for tensor network contraction. This article is a reminder that the research areas of graphical models and tensor networks can benefit from interaction

Hypernetworks for reconstructing the dynamics of multilevel systems

Networks are fundamental for reconstructing the dynamics of many systems, but have the drawback that they are restricted to binary relations. Hypergraphs extend relational structure to multi-vertex edges, but are essentially set-theoretic and unable to represent essential structural properties. Hypernetworks are a natural multidimensional generalisation of networks, representing n-ary relations by simplices with n vertices. The assembly of vertices to make simplices is key for moving between levels in multilevel systems, and integrating dynamics between levels. It is argued that hypernetworks are necessary, if not sufficient, for reconstructing the dynamics of multilevel complex systems

Finding hypernetworks in directed hypergraphs

The term ‘‘hypernetwork’’ (more precisely, s-hypernetwork and (s, d)-hypernetwork) has been recently adopted to denote some logical structures contained in a directed hypergraph. A hypernetwork identifies the core of a hypergraph model, obtained by filtering off redundant components. Therefore, finding hypernetworks has a notable relevance both from a theoretical and from a computational point of view. In this paper we provide a simple and fast algorithm for finding s-hypernetworks, which substantially improves on a method previously proposed in the literature. We also point out two linearly solvable particular cases. Finding an (s, d)-hypernetwork is known to be a hard problem, and only one polynomially solvable class has been found so far. Here we point out that this particular case is solvable in linear time

Forman's Ricci curvature - From networks to hypernetworks

Networks and their higher order generalizations, such as hypernetworks or multiplex networks are ever more popular models in the applied sciences. However, methods developed for the study of their structural properties go little beyond the common name and the heavy reliance of combinatorial tools. We show that, in fact, a geometric unifying approach is possible, by viewing them as polyhedral complexes endowed with a simple, yet, the powerful notion of curvature - the Forman Ricci curvature. We systematically explore some aspects related to the modeling of weighted and directed hypernetworks and present expressive and natural choices involved in their definitions. A benefit of this approach is a simple method of structure-preserving embedding of hypernetworks in Euclidean N-space. Furthermore, we introduce a simple and efficient manner of computing the well established Ollivier-Ricci curvature of a hypernetwork.Comment: to appear: Complex Networks '18 (oral presentation

Complexity and robustness in hypernetwork models of metabolism

Metabolic reaction data is commonly modelled using a complex network approach, whereby nodes represent the chemical species present within the organism of interest, and connections are formed between those nodes participating in the same chemical reaction. Unfortunately, such an approach provides an inadequate description of the metabolic process in general, as a typical chemical reaction will involve more than two nodes, thus risking over-simplification of the the system of interest in a potentially significant way. In this paper, we employ a complex hypernetwork formalism to investigate the robustness of bacterial metabolic hypernetworks by extending the concept of a percolation process to hypernetworks. Importantly, this provides a novel method for determining the robustness of these systems and thus for quantifying their resilience to random attacks/errors. Moreover, we performed a site percolation analysis on a large cohort of bacterial metabolic networks and found that hypernetworks that evolved in more variable enviro nments displayed increased levels of robustness and topological complexity

Design and Analysis of Optical Interconnection Networks for Parallel Computation.

In this doctoral research, we propose several novel protocols and topologies for the interconnection of massively parallel processors. These new technologies achieve considerable improvements in system performance and structure simplicity. Currently, synchronous protocols are used in optical TDM buses. The major disadvantage of a synchronous protocol is the waste of packet slots. To offset this inherent drawback of synchronous TDM, a pipelined asynchronous TDM optical bus is proposed. The simulation results show that the performance of the proposed bus is significantly better than that of known pipelined synchronous TDM optical buses. Practically, the computation power of the plain TDM protocol is limited. Various extensions must be added to the system. In this research, a new pipelined optical TDM bus for implementing a linear array parallel computer architecture is proposed. The switches on the receiving segment of the bus can be dynamically controlled, which make the system highly reconfigurable. To build large and scalable systems, we need new network architectures that are suitable for optical interconnections. A new kind of reconfigurable bus called segmented bus is introduced to achieve reduced structure simplicity and increased concurrency. We show that parallel architectures based on segmented buses are versatile by showing that it can simulate parallel communication patterns supported by a wide variety of networks with small slowdown factors. New kinds of interconnection networks, the hypernetworks, have been proposed recently. Compared with point-to-point networks, they allow for increased resource-sharing and communication bandwidth utilization, and they are especially suitable for optical interconnects. One way to derive a hypernetwork is by finding the dual of a point-to-point network. Hypercube Q\sb{n}, where n is the dimension, is a very popular point-to-point network. It is interesting to construct hypernetworks from the dual Q\sbsp{n}{*} of hypercube of Q\sb{n}. In this research, the properties of Q\sbsp{n}{*} are investigated and a set of fundamental data communication algorithms for Q\sbsp{n}{*} are presented. The results indicate that the Q\sbsp{n}{*} hypernetwork is a useful and promising interconnection structure for high-performance parallel and distributed computing systems