Overlapping communication and computation by using a hybrid MPI/SMPSs approach

A previous version of this document was submitted for publication by october 2008.Communication overhead is one of the dominant factors that affect performance in high-performance computing systems. To reduce the negative impact of communication, programmers overlap communication and computation by using asynchronous communication primitives. This increases code complexity, requiring more effort to write parallel code and making less readable code. This paper presents the hybrid use of MPI and SMPSs (SMP superscalar), a task-based shared-memory programming model, enhanced with a restart mechanism allowing the programmer to introduce the asynchronism that is necessary to enable the effective communication/computation overlap in a productive way. We demonstrate the hybrid use of MPI/SMPSs with the high-performance LINPACK benchmark, which uses the lookahead technique to overlap communication and computation. MPI/SMPSs improves the performance of a pure MPI with look-ahead by 7,6% on a 1024 processors machine. In addition to better performance, hybrid MPI/SMPSs substantially reduces code complexity, it is less sensitive to network bandwidth and operating system noise, and improves the use of main memory.Postprint (published version

Parallel memetic algorithms for independent job scheduling in computational grids

In this chapter we present parallel implementations of Memetic Algorithms (MAs) for the problem of scheduling independent jobs in computational grids. The problem of scheduling in computational grids is known for its high demanding computational time. In this work we exploit the intrinsic parallel nature of MAs as well as the fact that computational grids offer large amount of resources, a part of which could be used to compute the efficient allocation of jobs to grid resources. The parallel models exploited in this work for MAs include both fine-grained and coarse-grained parallelization and their hybridization. The resulting schedulers have been tested through different grid scenarios generated by a grid simulator to match different possible configurations of computational grids in terms of size (number of jobs and resources) and computational characteristics of resources. All in all, the result of this work showed that Parallel MAs are very good alternatives in order to match different performance requirement on fast scheduling of jobs to grid resources.Peer ReviewedPostprint (author's final draft

The Inter-cloud meta-scheduling

Inter-cloud is a recently emerging approach that expands cloud elasticity. By facilitating an adaptable setting, it purposes at the realization of a scalable resource provisioning that enables a diversity of cloud user requirements to be handled efficiently. This study’s contribution is in the inter-cloud performance optimization of job executions using metascheduling concepts. This includes the development of the inter-cloud meta-scheduling (ICMS) framework, the ICMS optimal schemes and the SimIC toolkit. The ICMS model is an architectural strategy for managing and scheduling user services in virtualized dynamically inter-linked clouds. This is achieved by the development of a model that includes a set of algorithms, namely the Service-Request, Service-Distribution, Service-Availability and Service-Allocation algorithms. These along with resource management optimal schemes offer the novel functionalities of the ICMS where the message exchanging implements the job distributions method, the VM deployment offers the VM management features and the local resource management system details the management of the local cloud schedulers. The generated system offers great flexibility by facilitating a lightweight resource management methodology while at the same time handling the heterogeneity of different clouds through advanced service level agreement coordination. Experimental results are productive as the proposed ICMS model achieves enhancement of the performance of service distribution for a variety of criteria such as service execution times, makespan, turnaround times, utilization levels and energy consumption rates for various inter-cloud entities, e.g. users, hosts and VMs. For example, ICMS optimizes the performance of a non-meta-brokering inter-cloud by 3%, while ICMS with full optimal schemes achieves 9% optimization for the same configurations. The whole experimental platform is implemented into the inter-cloud Simulation toolkit (SimIC) developed by the author, which is a discrete event simulation framework

Macroservers: An Execution Model for DRAM Processor-In-Memory Arrays

The emergence of semiconductor fabrication technology allowing a tight coupling between high-density DRAM and CMOS logic on the same chip has led to the important new class of Processor-In-Memory (PIM) architectures. Newer developments provide powerful parallel processing capabilities on the chip, exploiting the facility to load wide words in single memory accesses and supporting complex address manipulations in the memory. Furthermore, large arrays of PIMs can be arranged into a massively parallel architecture. In this report, we describe an object-based programming model based on the notion of a macroserver. Macroservers encapsulate a set of variables and methods; threads, spawned by the activation of methods, operate asynchronously on the variables' state space. Data distributions provide a mechanism for mapping large data structures across the memory region of a macroserver, while work distributions allow explicit control of bindings between threads and data. Both data and work distributuions are first-class objects of the model, supporting the dynamic management of data and threads in memory. This offers the flexibility required for fully exploiting the processing power and memory bandwidth of a PIM array, in particular for irregular and adaptive applications. Thread synchronization is based on atomic methods, condition variables, and futures. A special type of lightweight macroserver allows the formulation of flexible scheduling strategies for the access to resources, using a monitor-like mechanism

Concurrent software architectures for exploratory data analysis

Decades ago, increased volume of data made manual analysis obsolete and prompted the use of computational tools with interactive user interfaces and rich palette of data visualizations. Yet their classic, desktop-based architectures can no longer cope with the ever-growing size and complexity of data. Next-generation systems for explorative data analysis will be developed on client–server architectures, which already run concurrent software for data analytics but are not tailored to for an engaged, interactive analysis of data and models. In explorative data analysis, the key is the responsiveness of the system and prompt construction of interactive visualizations that can guide the users to uncover interesting data patterns. In this study, we review the current software architectures for distributed data analysis and propose a list of features to be included in the next generation frameworks for exploratory data analysis. The new generation of tools for explorative data analysis will need to address integrated data storage and processing, fast prototyping of data analysis pipelines supported by machine-proposed analysis workflows, preemptive analysis of data, interactivity, and user interfaces for intelligent data visualizations. The systems will rely on a mixture of concurrent software architectures to meet the challenge of seamless integration of explorative data interfaces at client site with management of concurrent data mining procedures on the servers

Concurrent software architectures for exploratory data analysis

Decades ago, increased volume of data made manual analysis obsolete and prompted the use of computational tools with interactive user interfaces and rich palette of data visualizations. Yet their classic, desktop-based architectures can no longer cope with the ever-growing size and complexity of data. Next-generation systems for explorative data analysis will be developed on client–server architectures, which already run concurrent software for data analytics but are not tailored to for an engaged, interactive analysis of data and models. In explorative data analysis, the key is the responsiveness of the system and prompt construction of interactive visualizations that can guide the users to uncover interesting data patterns. In this study, we review the current software architectures for distributed data analysis and propose a list of features to be included in the next generation frameworks for exploratory data analysis. The new generation of tools for explorative data analysis will need to address integrated data storage and processing, fast prototyping of data analysis pipelines supported by machine-proposed analysis workflows, preemptive analysis of data, interactivity, and user interfaces for intelligent data visualizations. The systems will rely on a mixture of concurrent software architectures to meet the challenge of seamless integration of explorative data interfaces at client site with management of concurrent data mining procedures on the servers

Parallel evolutionary algorithms for scheduling on heterogeneous computing and grid environments

This thesis studies the application of sequential and parallel evolutionary algorithms to the scheduling problem in heterogeneous computing and grid environments, a key problem when executing tasks in distributed computing systems. Since the 1990's, this class of systems has been increasingly employed to provide support for solving complex problems using high-performance computing techniques. The scheduling problem in heterogeneous computing systems is an NP-hard optimization problem, which has been tackled using several optimization methods in the past. Among many new techniques for optimization, evolutionary computing methods have been successfully applied to this class of problems. In this work, several evolutionary algorithms in their sequential and parallel variants are specically designed to provide accurate solutions for the problem, allowing to compute an eficient planning for heterogeneous computing and grid environments. New problem instances, far more complex than those existing in the related literature, are introduced in this thesis in order to study the scalability of the presented parallel evolutionary algorithms. In addition, a new parallel micro-CHC algorithm is developed, inspired by useful ideas from the multiobjective optimization field. Eficient numerical results of this algorithm are reported in the experimental analysis performed on both well-known problem instances and the large instances specially designed in this work. The comparative study including traditional methods and evolutionary algorithms shows that the new parallel micro-CHC is able to achieve a high problem solving eficacy, outperforming previous results already reported for the problem and also having a good scalability behavior when solving high dimension problem instances.In addition, two variants of the scheduling problem in heterogeneous environments are also tackled, showing the versatility of the proposed approach using parallel evolutionary algorithms to deal with both dynamic and multi-objective scenarios.Esta tesis estudia la aplicación de algoritmos evolutivos secuenciales y paralelos para el problema de planicación de tareas en entornos de cómputo heterogéneos y de computación grid. Desde la década de 1990, estos sistemas computacionales han sido utilizados con éxito para resolver problemas complejos utilizando técnicas de computación de alto desempeo. El problema de planificación de tareas en entornos heterogéneos es un problema de optimización NP-difícil que ha sido abordado utilizando diversas técnicas. Entre las técnicas emergentes para optimización combinatoria, los algoritmos evolutivos han sido aplicados con éxito a esta clase de problemas. En este trabajo, varios algoritmos evolutivos en sus versiones secuenciales y paralelas han sido especificamente diseados para alcanzar soluciones precisas para el problema de planicación de tareas en entornos de heterogéneos, permitiendo calcular planificaciones eficientes para entornos que modelan clusters de computadores y plataformas de computación grid. Nuevas instancias del problema, con una complejidad mucho mayor que las previamente existentes en la literatura relacionada, son presentadas en esta tesis con el objetivo de analizar la escalabilidad de los algoritmos evolutivos propuestos. Complementariamente, un nuevo método, el micro-CHC paralelo es desarrollado, inspirado en ideas ítiles provenientes del área de optimización multiobjetivo. Resultados numéricos precisos y eficientes se reportan en el análisis experimental realizado sobre instancias estándar del problema y sobre las nuevas instancias especificamente diseñadas en este trabajo.El estudio comparativo que incluye a métodos tradicionales para planificación de tareas, los nuevos métodos propuestos y algoritmos evolutivos previamente aplicados al problema, demuestra que el nuevo micro-CHC paralelo es capaz de alcanzar altos valores de eficacia, superando a los mejores resultados previamente reportados en la literatura del área y mostrando un buen comportamiento de escalabilidad para resolver las instancias de gran dimensión. Además, dos variantes del problema de planificación de tareas en entornos heterogéneos han sido inicialmente estudiadas, comprobándose la versatilidad del enfoque propuesto para resolver las variantes dinámica y multiobjetivo del problema

DESIGN AND EVALUATION OF RESOURCE ALLOCATION AND JOB SCHEDULING ALGORITHMS ON COMPUTATIONAL GRIDS

Grid, an infrastructure for resource sharing, currently has shown its importance in many scientific applications requiring tremendously high computational power. Grid computing enables sharing, selection and aggregation of resources for solving complex and large-scale scientific problems. Grids computing, whose resources are distributed, heterogeneous and dynamic in nature, introduces a number of fascinating issues in resource management. Grid scheduling is the key issue in grid environment in which its system must meet the functional requirements of heterogeneous domains, which are sometimes conflicting in nature also, like user, application, and network. Moreover, the system must satisfy non-functional requirements like reliability, efficiency, performance, effective resource utilization, and scalability. Thus, overall aim of this research is to introduce new grid scheduling algorithms for resource allocation as well as for job scheduling for enabling a highly efficient and effective utilization of the resources in executing various applications. The four prime aspects of this work are: firstly, a model of the grid scheduling problem for dynamic grid computing environment; secondly, development of a new web based simulator (SyedWSim), enabling the grid users to conduct a statistical analysis of grid workload traces and provides a realistic basis for experimentation in resource allocation and job scheduling algorithms on a grid; thirdly, proposal of a new grid resource allocation method of optimal computational cost using synthetic and real workload traces with respect to other allocation methods; and finally, proposal of some new job scheduling algorithms of optimal performance considering parameters like waiting time, turnaround time, response time, bounded slowdown, completion time and stretch time. The issue is not only to develop new algorithms, but also to evaluate them on an experimental computational grid, using synthetic and real workload traces, along with the other existing job scheduling algorithms. Experimental evaluation confirmed that the proposed grid scheduling algorithms possess a high degree of optimality in performance, efficiency and scalability