Acceleration of k-Nearest Neighbor and SRAD Algorithms Using Intel FPGA SDK for OpenCL

Field Programmable Gate Arrays (FPGAs) have been widely used for accelerating machine learning algorithms. However, the high design cost and time for implementing FPGA-based accelerators using traditional HDL-based design methodologies has discouraged users from designing FPGA-based accelerators. In recent years, a new CAD tool called Intel FPGA SDK for OpenCL (IFSO) allowed fast and efficient design of FPGA-based hardware accelerators from high level specification such as OpenCL. Even software engineers with basic hardware design knowledge could design FPGA-based accelerators. In this thesis, IFSO has been used to explore acceleration of k-Nearest-Neighbour (kNN) algorithm and Speckle Reducing Anisotropic Diffusion (SRAD) simulation using FPGAs. kNN is a popular algorithm used in machine learning. Bitonic sorting and radix sorting algorithms were used in the kNN algorithm to check if these provide any performance improvements. Acceleration of SRAD simulation was also explored. The experimental results obtained for these algorithms from FPGA-based acceleration were compared with the state of the art CPU implementation. The optimized algorithms were implemented on two different FPGAs (Intel Stratix A7 and Intel Arria 10 GX). Experimental results show that the FPGA-based accelerators provided similar or better execution time (up to 80X) and better power efficiency (75% reduction in power consumption) than traditional platforms such as a workstation based on two Intel Xeon processors E5-2620 Series (each with 6 cores and running at 2.4 GHz)

FPGA-based data partitioning

Implementing parallel operators in multi-core machines often involves a data partitioning step that divides the data into cache-size blocks and arranges them so to allow concurrent threads to process them in parallel. Data partitioning is expensive, in some cases up to 90% of the cost of, e.g., a parallel hash join. In this paper we explore the use of an FPGA to accelerate data partitioning. We do so in the context of new hybrid architectures where the FPGA is located as a co-processor residing on a socket and with coherent access to the same memory as the CPU residing on the other socket. Such an architecture reduces data transfer overheads between the CPU and the FPGA, enabling hybrid operator execution where the partitioning happens on the FPGA and the build and probe phases of a join happen on the CPU. Our experiments demonstrate that FPGA-based partitioning is significantly faster and more robust than CPU-based partitioning. The results open interesting options as FPGAs are gradually integrated tighter with the CPU

CEAZ: Accelerating Parallel I/O via Hardware-Algorithm Co-Design of Efficient and Adaptive Lossy Compression

As supercomputers continue to grow to exascale, the amount of data that needs to be saved or transmitted is exploding. To this end, many previous works have studied using error-bounded lossy compressors to reduce the data size and improve the I/O performance. However, little work has been done for effectively offloading lossy compression onto FPGA-based SmartNICs to reduce the compression overhead. In this paper, we propose a hardware-algorithm co-design of efficient and adaptive lossy compressor for scientific data on FPGAs (called CEAZ) to accelerate parallel I/O. Our contribution is fourfold: (1) We propose an efficient Huffman coding approach that can adaptively update Huffman codewords online based on codewords generated offline (from a variety of representative scientific datasets). (2) We derive a theoretical analysis to support a precise control of compression ratio under an error-bounded compression mode, enabling accurate offline Huffman codewords generation. This also helps us create a fixed-ratio compression mode for consistent throughput. (3) We develop an efficient compression pipeline by adopting cuSZ's dual-quantization algorithm to our hardware use case. (4) We evaluate CEAZ on five real-world datasets with both a single FPGA board and 128 nodes from Bridges-2 supercomputer. Experiments show that CEAZ outperforms the second-best FPGA-based lossy compressor by 2X of throughput and 9.6X of compression ratio. It also improves MPI_File_write and MPI_Gather throughputs by up to 25.8X and 24.8X, respectively.Comment: 14 pages, 17 figures, 8 table

Hardware Architectures for Post-Quantum Cryptography

The rapid development of quantum computers poses severe threats to many commonly-used cryptographic algorithms that are embedded in different hardware devices to ensure the security and privacy of data and communication. Seeking for new solutions that are potentially resistant against attacks from quantum computers, a new research field called Post-Quantum Cryptography (PQC) has emerged, that is, cryptosystems deployed in classical computers conjectured to be secure against attacks utilizing large-scale quantum computers. In order to secure data during storage or communication, and many other applications in the future, this dissertation focuses on the design, implementation, and evaluation of efficient PQC schemes in hardware. Four PQC algorithms, each from a different family, are studied in this dissertation. The first hardware architecture presented in this dissertation is focused on the code-based scheme Classic McEliece. The research presented in this dissertation is the first that builds the hardware architecture for the Classic McEliece cryptosystem. This research successfully demonstrated that complex code-based PQC algorithm can be run efficiently on hardware. Furthermore, this dissertation shows that implementation of this scheme on hardware can be easily tuned to different configurations by implementing support for flexible choices of security parameters as well as configurable hardware performance parameters. The successful prototype of the Classic McEliece scheme on hardware increased confidence in this scheme, and helped Classic McEliece to get recognized as one of seven finalists in the third round of the NIST PQC standardization process. While Classic McEliece serves as a ready-to-use candidate for many high-end applications, PQC solutions are also needed for low-end embedded devices. Embedded devices play an important role in our daily life. Despite their typically constrained resources, these devices require strong security measures to protect them against cyber attacks. Towards securing this type of devices, the second research presented in this dissertation focuses on the hash-based digital signature scheme XMSS. This research is the first that explores and presents practical hardware based XMSS solution for low-end embedded devices. In the design of XMSS hardware, a heterogenous software-hardware co-design approach was adopted, which combined the flexibility of the soft core with the acceleration from the hard core. The practicability and efficiency of the XMSS software-hardware co-design is further demonstrated by providing a hardware prototype on an open-source RISC-V based System-on-a-Chip (SoC) platform. The third research direction covered in this dissertation focuses on lattice-based cryptography, which represents one of the most promising and popular alternatives to today\u27s widely adopted public key solutions. Prior research has presented hardware designs targeting the computing blocks that are necessary for the implementation of lattice-based systems. However, a recurrent issue in most existing designs is that these hardware designs are not fully scalable or parameterized, hence limited to specific cryptographic primitives and security parameter sets. The research presented in this dissertation is the first that develops hardware accelerators that are designed to be fully parameterized to support different lattice-based schemes and parameters. Further, these accelerators are utilized to realize the first software-harware co-design of provably-secure instances of qTESLA, which is a lattice-based digital signature scheme. This dissertation demonstrates that even demanding, provably-secure schemes can be realized efficiently with proper use of software-hardware co-design. The final research presented in this dissertation is focused on the isogeny-based scheme SIKE, which recently made it to the final round of the PQC standardization process. This research shows that hardware accelerators can be designed to offload compute-intensive elliptic curve and isogeny computations to hardware in a versatile fashion. These hardware accelerators are designed to be fully parameterized to support different security parameter sets of SIKE as well as flexible hardware configurations targeting different user applications. This research is the first that presents versatile hardware accelerators for SIKE that can be mapped efficiently to both FPGA and ASIC platforms. Based on these accelerators, an efficient software-hardwareco-design is constructed for speeding up SIKE. In the end, this dissertation demonstrates that, despite being embedded with expensive arithmetic, the isogeny-based SIKE scheme can be run efficiently by exploiting specialized hardware. These four research directions combined demonstrate the practicability of building efficient hardware architectures for complex PQC algorithms. The exploration of efficient PQC solutions for different hardware platforms will eventually help migrate high-end servers and low-end embedded devices towards the post-quantum era

FLiMS: a fast lightweight 2-way merger for sorting

In this paper, we present FLiMS, a highly-efficient and simple parallel algorithm for merging two sorted lists residing in banked and/or wide memory. On FPGAs, its implementation uses fewer hardware resources than the state-of-the-art alternatives, due to the reduced number of comparators and elimination of redundant logic found on prior attempts. In combination with the distributed nature of the selector stage, a higher performance is achieved for the same amount of parallelism or higher. This is useful in many applications such as in parallel merge trees to achieve high-throughput sorting, where the resource utilisation of the merger is critical for building larger trees and internalising the workload for faster computation. Also presented are efficient variations of FLiMS for optimizing throughput for skewed datasets, achieving stable sorting or using fewer dequeue signals. FLiMS is also shown to perform well as conventional software on modern CPUs supporting single-instruction multiple-data (SIMD) instructions, surpassing the performance of some standard libraries for sorting