Contains and Inside relationships within combinatorial Pyramids

Irregular pyramids are made of a stack of successively reduced graphs embedded in the plane. Such pyramids are used within the segmentation framework to encode a hierarchy of partitions. The different graph models used within the irregular pyramid framework encode different types of relationships between regions. This paper compares different graph models used within the irregular pyramid framework according to a set of relationships between regions. We also define a new algorithm based on a pyramid of combinatorial maps which allows to determine if one region contains the other using only local calculus.Comment: 35 page

Hierarchy construction schemes within the Scale set framework

Segmentation algorithms based on an energy minimisation framework often depend on a scale parameter which balances a fit to data and a regularising term. Irregular pyramids are defined as a stack of graphs successively reduced. Within this framework, the scale is often defined implicitly as the height in the pyramid. However, each level of an irregular pyramid can not usually be readily associated to the global optimum of an energy or a global criterion on the base level graph. This last drawback is addressed by the scale set framework designed by Guigues. The methods designed by this author allow to build a hierarchy and to design cuts within this hierarchy which globally minimise an energy. This paper studies the influence of the construction scheme of the initial hierarchy on the resulting optimal cuts. We propose one sequential and one parallel method with two variations within both. Our sequential methods provide partitions near the global optima while parallel methods require less execution times than the sequential method of Guigues even on sequential machines

Recent Advances in Graph Partitioning

We survey recent trends in practical algorithms for balanced graph partitioning together with applications and future research directions

Memetic Multilevel Hypergraph Partitioning

Hypergraph partitioning has a wide range of important applications such as VLSI design or scientific computing. With focus on solution quality, we develop the first multilevel memetic algorithm to tackle the problem. Key components of our contribution are new effective multilevel recombination and mutation operations that provide a large amount of diversity. We perform a wide range of experiments on a benchmark set containing instances from application areas such VLSI, SAT solving, social networks, and scientific computing. Compared to the state-of-the-art hypergraph partitioning tools hMetis, PaToH, and KaHyPar, our new algorithm computes the best result on almost all instances

Hierarchical watersheds within the Combinatorial Pyramid framework

International audienceWatershed is the latest tool used in mathematical morphology. The algorithms which implement the watershed transform generally produce an over segmentation which includes the right image's boundaries. Based on this last assumption, the segmentation problem turns out to be equivalent to a proper valuation of the saliency of each contour. Using such a measure, hierarchical watershed algorithms use the edge's saliency conjointly with statistical tests to Decemberimate the initial partition. On the other hand, Irregular Pyramids encode a stack of successively reduced partitions. Combinatorial Pyramids consitute the latest model of this family. Within this framework, each partition is encoded by a combinatorial map which encodes all topological relationships between regions such as multInformation Processing Letterse boundaries and inclusion relationships. Moreover, the combinatorial pyramid framework provides a direct access to the embedding of the image's boundaries. We present in this paper a hierarchical watershed algorithm based on combinatorial pyramids. Our method overcomes the problems connected to the presence of noise both within the basins and along the watershed contours

High-Quality Hypergraph Partitioning

This dissertation focuses on computing high-quality solutions for the NP-hard balanced hypergraph partitioning problem: Given a hypergraph and an integer $k$, partition its vertex set into $k$ disjoint blocks of bounded size, while minimizing an objective function over the hyperedges. Here, we consider the two most commonly used objectives: the cut-net metric and the connectivity metric. Since the problem is computationally intractable, heuristics are used in practice - the most prominent being the three-phase multi-level paradigm: During coarsening, the hypergraph is successively contracted to obtain a hierarchy of smaller instances. After applying an initial partitioning algorithm to the smallest hypergraph, contraction is undone and, at each level, refinement algorithms try to improve the current solution. With this work, we give a brief overview of the field and present several algorithmic improvements to the multi-level paradigm. Instead of using a logarithmic number of levels like traditional algorithms, we present two coarsening algorithms that create a hierarchy of (nearly) $n$ levels, where $n$ is the number of vertices. This makes consecutive levels as similar as possible and provides many opportunities for refinement algorithms to improve the partition. This approach is made feasible in practice by tailoring all algorithms and data structures to the $n$-level paradigm, and developing lazy-evaluation techniques, caching mechanisms and early stopping criteria to speed up the partitioning process. Furthermore, we propose a sparsification algorithm based on locality-sensitive hashing that improves the running time for hypergraphs with large hyperedges, and show that incorporating global information about the community structure into the coarsening process improves quality. Moreover, we present a portfolio-based initial partitioning approach, and propose three refinement algorithms. Two are based on the Fiduccia-Mattheyses (FM) heuristic, but perform a highly localized search at each level. While one is designed for two-way partitioning, the other is the first FM-style algorithm that can be efficiently employed in the multi-level setting to directly improve $k$-way partitions. The third algorithm uses max-flow computations on pairs of blocks to refine $k$-way partitions. Finally, we present the first memetic multi-level hypergraph partitioning algorithm for an extensive exploration of the global solution space. All contributions are made available through our open-source framework KaHyPar. In a comprehensive experimental study, we compare KaHyPar with hMETIS, PaToH, Mondriaan, Zoltan-AlgD, and HYPE on a wide range of hypergraphs from several application areas. Our results indicate that KaHyPar, already without the memetic component, computes better solutions than all competing algorithms for both the cut-net and the connectivity metric, while being faster than Zoltan-AlgD and equally fast as hMETIS. Moreover, KaHyPar compares favorably with the current best graph partitioning system KaFFPa - both in terms of solution quality and running time

Design and optimisation of scientific programs in a categorical language

This thesis presents an investigation into the use of advanced computer languages for scientific computing, an examination of performance issues that arise from using such languages for such a task, and a step toward achieving portable performance from compilers by attacking these problems in a way that compensates for the complexity of and differences between modern computer architectures. The language employed is Aldor, a functional language from computer algebra, and the scientific computing area is a subset of the family of iterative linear equation solvers applied to sparse systems. The linear equation solvers that are considered have much common structure, and this is factored out and represented explicitly in the lan-guage as a framework, by means of categories and domains. The flexibility introduced by decomposing the algorithms and the objects they act on into separate modules has a strong performance impact due to its negative effect on temporal locality. This necessi-tates breaking the barriers between modules to perform cross-component optimisation. In this instance the task reduces to one of collective loop fusion and array contrac