Hominin evolution was caused by introgression from Gorilla

The discovery of Paranthropus deyiremeda in 3.3-3.5 million year old fossil sites in Afar, together with 30% of the gorilla genome showing lineage sorting between humans and chimpanzees, and a NUMT ("nuclear mitochondrial DNA segment") on chromosome 5 that is shared by both gorillas, humans and chimpanzees, and shown to have diverged at the time of the Pan-Homo split rather than the Gorilla/Pan-Homo split, provides conclusive evidence that introgression from the gorilla lineage caused the Pan-Homo split, and the speciation of both the Australopithecus lineage and the Paranthropus lineage.Comment: arXiv admin note: text overlap with arXiv:1808.0630

Core promoter short tandem repeats as evolutionary switch codes for primate speciation

Alteration in gene expression levels underlies many of the phenotypic differences across species. Because of their highly mutable nature, proximity to the +1 transcription start site (TSS), and the emerging evidence of functional impact on gene expression, core promoter short tandem repeats (STRs) may be considered an ideal source of variation across species. In a genome-scale analysis of the entire Homo sapiens protein-coding genes, we have previously identified core promoters with at least one STR of ≥6-repeats, with possible selective advantage in this species. In the current study, we performed reverse analysis of the entire Homo sapiens orthologous genes in mouse in the Ensembl database, in order to identify conserved STRs that have shrunk as an evolutionary advantage to humans. Two protocols were used to minimize ascertainment bias. Firstly, two species sharing a more recent ancestor with Homo sapiens (i.e. Pan troglodytes and Gorilla gorilla gorilla) were also included in the study. Secondly, four non-primate species encompassing the major orders across Mammals, including Scandentia, Laurasiatheria, Afrotheria, and Xenarthra were analyzed as out-groups. We introduce STR evolutionary events specifically identical in primates (i.e. Homo sapiens, Pan troglodytes, and Gorilla gorilla gorilla) vs. non-primate out-groups. The average frequency of the identically shared STR motifs across those primates ranged between 0.00005 and 0.06. The identified genes are involved in important evolutionary and developmental processes, such as normal craniofacial development (TFAP2B), regulation of cell shape (PALMD), learning and long-term memory (RGS14), nervous system development (GFRA2), embryonic limb morphogenesis (PBX2), and forebrain development (APAF1). We provide evidence of core promoter STRs as evolutionary switch codes for primate speciation, and the first instance of identity-by-descent for those motifs at the interspecies level. © 2014 Wiley Periodicals, Inc

Time and distribution: a model of ape biogeography

We use data from 20 chimpanzee, bonobo and gorilla study sites to develop an African great ape time budgets model to predict the animals' capacity to survive in a range of habitats across sub-Saharan Africa. The model uses body mass and climatic data to predict the time animals must allocate to key activities (feeding, moving, resting and social interaction), and then uses these to assess the limiting group size that could be sustained in a particular habitat. The model is robust against changes in minimum cut-off values, and predicts the current biogeographic distributions of the two African ape species remarkably well. Predicted group sizes for Pan and Gorilla are close to observed averages. The model also indicates that moving time plays a crucial role for both Pan and Gorilla site presence: i.e. at sites where they are absent it is primarily moving time that is increased as compared to other time budget variables. Finally, the model demonstrates that Pan and Gorilla distributions and group sizes can be accurately modelled by simply modifying the body mass variable, indicating that both share a similar underlying ecological bauplan

The origin of human chromosome 2 analyzed by comparative chromosome mapping with a DNA microlibrary

Fluorescencein situ hybridization (FISH) of microlibraries established from distinct chromosome subregions can test the evolutionary conservation of chromosome bands as well as chromosomal rearrangements that occurred during primate evolution and will help to clarify phylogenetic relationships. We used a DNA library established by microdissection and microcloning from the entire long arm of human chromosome 2 for fluorescencein situ hybridization and comparative mapping of the chromosomes of human, great apes (Pan troglodytes, Pan paniscus, Gorilla gorilla, Pongo pygmaeus) and Old World monkeys (Macaca fuscata andCercopithecus aethiops). Inversions were found in the pericentric region of the primate chromosome 2p homologs in great apes, and the hybridization pattern demonstrates the known phylogenetically derived telomere fusion in the line that leads to human chromosome 2. The hybridization of the 2q microlibrary to chromosomes of Old World monkeys gave a different pattern from that in the gorilla and the orang-utan, but a pattern similar to that of chimpanzees. This suggests convergence of chromosomal rearrangements in different phylogenetic lines

Molecular characterisation of protist parasites in human-habituated mountain gorillas (Gorilla beringei beringei), humans and livestock, from Bwindi impenetrable National Park, Uganda

Over 60 % of human emerging infectious diseases are zoonotic, and there is growing evidence of the zooanthroponotic transmission of diseases from humans to livestock and wildlife species, with major implications for public health, economics, and conservation. Zooanthroponoses are of relevance to critically endangered species; amongst these is the mountain gorilla (Gorilla beringei beringei) of Uganda. Here, we assess the occurrence of Cryptosporidium, Cyclospora, Giardia, and Entamoeba infecting mountain gorillas in the Bwindi Impenetrable National Park (BINP), Uganda, using molecular methods. We also assess the occurrence of these parasites in humans and livestock species living in overlapping/adjacent geographical regions

Mirror self-recognition in a gorilla (gorilla gorilla gorilla)

Psychologists have studied self-recognition in human infants as an indication of self-knowledge (Amsterdam, 1972) and the development of abstract thought processes. Gallup (1970) modified the mark test used in human infant work to examine if nonhuman primates showed similar evidence of mirror self-recognition. Chimpanzees (Pan troglodytes) and orangutans (Pongo pygmnaeus) pass the mirror self-recognition test with limited mirror training or exposure. Other species of primates, such as gorillas and monkeys, have not passed the mirror test, despite extensive mirror exposure and training (Gallup, 1979). This project examined a gorilla (G. gorilla gorilla) named Otto in the traditional mark test. Using the modified mark-test, there were more incidents of touching the marked area while Otto was in front of the mirror than when he was not in front of the mirror. These results indicated that Otto was able to show some evidence of selfawareness

Gorilla gorilla

Assessment Information: Justification: Gorilla gorillahas a large geographic range, covering over 700,000 km². The size of the population is currently being evaluated, but thought to be in the order of a few hundred thousand (Strindberg et al. in prep). Only a very small number of Western Gorillas are the G. g. diehli subspecies, therefore this rationale focuses on the G. g. gorilla subspecies. The country of Gabon lost over half its Gorilla population between 1983 and 2000 (Walsh et al. 2003). More recent population declines have been estimated using a predictive model that incorporated survey data collected between 2003 and 2013 across the entire range of Western Lowland Gorillas. The results reveal an 18.75% decline between 2005 and 2013, corresponding to an annual loss of ~2.56% (Strindberg et al. in prep). These population decreases were driven by poaching and disease (Ebolavirus) outbreaks.Despite their abundance and wide geographic range, Western Gorillas qualify as Critically Endangered under criterion A: a population reduction of more than 80% over three generations (one generation is ~22 years). This listing is based on ongoing population losses due to illegal hunting, disease and habitat loss: poaching is intensifying with the expansion of access routes into forests and Zaire Ebolavirus remains a highly significant threat. At a conservative rate of reduction (2.56% per year rather than 4%, calculated from Walsh et al. 2003), the reduction in the Western Gorilla population is predicted to exceed 80% over three generations (i.e., 66 years, 2005-2071). Illegal hunting has not ceased despite intense anti-poaching efforts, and the threat of Ebolavirus has not been removed. In addition, the scale of habitat conversion to industrial agriculture will increase, and the effects of climate change will become more evident.Gorilla gorillathus qualifies as Critically Endangered (A4bcde)

Communication of where an event occurred by a gorilla (gorilla gorilla gorilla)

Episodic-like memory for the where component of unique events was examined in an adult gorilla (Gorilla gorilla gorilla). The gorilla witnessed a unique event, performed by an experimenter (e.g. watching an experimenter blow bubbles) at one of three locations surrounding his enclosure. After a 4 to 17 minute retention interval, a tester presented the gorilla with photographs of the three locations, which were mounted on wooden cards, and asked the gorilla where the event had occurred. The gorilla communicated his choice by handing a card to the tester and was rewarded if correct. The gorilla was significantly above chance at identifying the event location. Results suggest that the gorilla was not responding on the basis of familiarity by choosing the most recently visited location, but choosing the location where the event occurred