Checking sequence construction using adaptive and preset distinguishing sequences

Methods for testing from finite state machine-based specifications often require the existence of a preset distinguishing sequence for constructing checking sequences. It has been shown that an adaptive distinguishing sequence is sufficient for these methods. This result is significant because adaptive distinguishing sequences are strictly more common and up to exponentially shorter than preset ones. However, there has been no study on the actual effect of using adaptive distinguishing sequences on the length of checking sequences. This paper describes experiments that show that checking sequences constructed using adaptive distinguishing sequences are almost consistently shorter than those based on preset distinguishing sequences. This is investigated for three different checking sequence generation methods and the results obtained from an extensive experimental study are given

Structured Review of Code Clone Literature

This report presents the results of a structured review of code clone literature. The aim of the review is to assemble a conceptual model of clone-related concepts which helps us to reason about clones. This conceptual model unifies clone concepts from a wide range of literature, so that findings about clones can be compared with each other

Type-elimination-based reasoning for the description logic SHIQbs using decision diagrams and disjunctive datalog

We propose a novel, type-elimination-based method for reasoning in the description logic SHIQbs including DL-safe rules. To this end, we first establish a knowledge compilation method converting the terminological part of an ALCIb knowledge base into an ordered binary decision diagram (OBDD) which represents a canonical model. This OBDD can in turn be transformed into disjunctive Datalog and merged with the assertional part of the knowledge base in order to perform combined reasoning. In order to leverage our technique for full SHIQbs, we provide a stepwise reduction from SHIQbs to ALCIb that preserves satisfiability and entailment of positive and negative ground facts. The proposed technique is shown to be worst case optimal w.r.t. combined and data complexity and easily admits extensions with ground conjunctive queries.Comment: 38 pages, 3 figures, camera ready version of paper accepted for publication in Logical Methods in Computer Scienc

MetalDetector v2.0: predicting the geometry of metal binding sites from protein sequence

MetalDetector identifies CYS and HIS involved in transition metal protein binding sites, starting from sequence alone. A major new feature of release 2.0 is the ability to predict which residues are jointly involved in the coordination of the same metal ion. The server is available at http://metaldetector.dsi.unifi.it/v2.0/

Study of fault tolerant software technology for dynamic systems

The major aim of this study is to investigate the feasibility of using systems-based failure detection isolation and compensation (FDIC) techniques in building fault-tolerant software and extending them, whenever possible, to the domain of software fault tolerance. First, it is shown that systems-based FDIC methods can be extended to develop software error detection techniques by using system models for software modules. In particular, it is demonstrated that systems-based FDIC techniques can yield consistency checks that are easier to implement than acceptance tests based on software specifications. Next, it is shown that systems-based failure compensation techniques can be generalized to the domain of software fault tolerance in developing software error recovery procedures. Finally, the feasibility of using fault-tolerant software in flight software is investigated. In particular, possible system and version instabilities, and functional performance degradation that may occur in N-Version programming applications to flight software are illustrated. Finally, a comparative analysis of N-Version and recovery block techniques in the context of generic blocks in flight software is presented