Adapting Evolutionary Approaches for Optimization in Dynamic Environments

Many important applications in the real world that can be modelled as combinatorial optimization problems are actually dynamic in nature. However, research on dynamic optimization focuses on continuous optimization problems, and rarely targets combinatorial problems. Moreover, dynamic combinatorial problems, when addressed, are typically tackled within an application context. In this thesis, dynamic combinatorial problems are addressed collectively by adopting an evolutionary based algorithmic approach. On the plus side, their ability to manipulate several solutions at a time, their robustness and their potential for adaptability make evolutionary algorithms a good choice for solving dynamic problems. However, their tendency to converge prematurely, the difficulty in fine-tuning their search and their lack of diversity in tracking optima that shift in dynamic environments are drawbacks in this regard. Developing general methodologies to tackle these conflicting issues constitutes the main theme of this thesis. First, definitions and measures of algorithm performance are reviewed. Second, methods of benchmark generation are developed under a generalized framework. Finally, methods to improve the ability of evolutionary algorithms to efficiently track optima shifting due to environmental changes are investigated. These methods include adapting genetic parameters to population diversity and environmental changes, the use of multi-populations as an additional means to control diversity, and the incorporation of local search heuristics to fine-tune the search process efficiently. The methodologies developed for algorithm enhancement and benchmark generation are used to build and test evolutionary models for dynamic versions of the travelling salesman problem and the flexible manufacturing system. Results of experimentation demonstrate that the methods are effective on both problems and hence have a great potential for other dynamic combinatorial problems as well

A generalized approach to construct benchmark problems for dynamic optimization

Copyright @ Springer-Verlag Berlin Heidelberg 2008.There has been a growing interest in studying evolutionary algorithms in dynamic environments in recent years due to its importance in real applications. However, different dynamic test problems have been used to test and compare the performance of algorithms. This paper proposes a generalized dynamic benchmark generator (GDBG) that can be instantiated into the binary space, real space and combinatorial space. This generator can present a set of different properties to test algorithms by tuning some control parameters. Some experiments are carried out on the real space to study the performance of the generator.This work was supported by the Engineering and Physical Sciences Research Council (EPSRC) of UK under Grant EP/E060722/1

Survey on Combinatorial Register Allocation and Instruction Scheduling

Register allocation (mapping variables to processor registers or memory) and instruction scheduling (reordering instructions to increase instruction-level parallelism) are essential tasks for generating efficient assembly code in a compiler. In the last three decades, combinatorial optimization has emerged as an alternative to traditional, heuristic algorithms for these two tasks. Combinatorial optimization approaches can deliver optimal solutions according to a model, can precisely capture trade-offs between conflicting decisions, and are more flexible at the expense of increased compilation time. This paper provides an exhaustive literature review and a classification of combinatorial optimization approaches to register allocation and instruction scheduling, with a focus on the techniques that are most applied in this context: integer programming, constraint programming, partitioned Boolean quadratic programming, and enumeration. Researchers in compilers and combinatorial optimization can benefit from identifying developments, trends, and challenges in the area; compiler practitioners may discern opportunities and grasp the potential benefit of applying combinatorial optimization

The Parallelism Motifs of Genomic Data Analysis

Genomic data sets are growing dramatically as the cost of sequencing continues to decline and small sequencing devices become available. Enormous community databases store and share this data with the research community, but some of these genomic data analysis problems require large scale computational platforms to meet both the memory and computational requirements. These applications differ from scientific simulations that dominate the workload on high end parallel systems today and place different requirements on programming support, software libraries, and parallel architectural design. For example, they involve irregular communication patterns such as asynchronous updates to shared data structures. We consider several problems in high performance genomics analysis, including alignment, profiling, clustering, and assembly for both single genomes and metagenomes. We identify some of the common computational patterns or motifs that help inform parallelization strategies and compare our motifs to some of the established lists, arguing that at least two key patterns, sorting and hashing, are missing