Information Extraction and Modeling from Remote Sensing Images: Application to the Enhancement of Digital Elevation Models

To deal with high complexity data such as remote sensing images presenting metric resolution over large areas, an innovative, fast and robust image processing system is presented. The modeling of increasing level of information is used to extract, represent and link image features to semantic content. The potential of the proposed techniques is demonstrated with an application to enhance and regularize digital elevation models based on information collected from RS images

Two and three dimensional segmentation of multimodal imagery

The role of segmentation in the realms of image understanding/analysis, computer vision, pattern recognition, remote sensing and medical imaging in recent years has been significantly augmented due to accelerated scientific advances made in the acquisition of image data. This low-level analysis protocol is critical to numerous applications, with the primary goal of expediting and improving the effectiveness of subsequent high-level operations by providing a condensed and pertinent representation of image information. In this research, we propose a novel unsupervised segmentation framework for facilitating meaningful segregation of 2-D/3-D image data across multiple modalities (color, remote-sensing and biomedical imaging) into non-overlapping partitions using several spatial-spectral attributes. Initially, our framework exploits the information obtained from detecting edges inherent in the data. To this effect, by using a vector gradient detection technique, pixels without edges are grouped and individually labeled to partition some initial portion of the input image content. Pixels that contain higher gradient densities are included by the dynamic generation of segments as the algorithm progresses to generate an initial region map. Subsequently, texture modeling is performed and the obtained gradient, texture and intensity information along with the aforementioned initial partition map are used to perform a multivariate refinement procedure, to fuse groups with similar characteristics yielding the final output segmentation. Experimental results obtained in comparison to published/state-of the-art segmentation techniques for color as well as multi/hyperspectral imagery, demonstrate the advantages of the proposed method. Furthermore, for the purpose of achieving improved computational efficiency we propose an extension of the aforestated methodology in a multi-resolution framework, demonstrated on color images. Finally, this research also encompasses a 3-D extension of the aforementioned algorithm demonstrated on medical (Magnetic Resonance Imaging / Computed Tomography) volumes

Generalizable automated pixel-level structural segmentation of medical and biological data

Over the years, the rapid expansion in imaging techniques and equipments has driven the demand for more automation in handling large medical and biological data sets. A wealth of approaches have been suggested as optimal solutions for their respective imaging types. These solutions span various image resolutions, modalities and contrast (staining) mechanisms. Few approaches generalise well across multiple image types, contrasts or resolution. This thesis proposes an automated pixel-level framework that addresses 2D, 2D+t and 3D structural segmentation in a more generalizable manner, yet has enough adaptability to address a number of specific image modalities, spanning retinal funduscopy, sequential fluorescein angiography and two-photon microscopy. The pixel-level segmentation scheme involves: i ) constructing a phase-invariant orientation field of the local spatial neighbourhood; ii ) combining local feature maps with intensity-based measures in a structural patch context; iii ) using a complex supervised learning process to interpret the combination of all the elements in the patch in order to reach a classification decision. This has the advantage of transferability from retinal blood vessels in 2D to neural structures in 3D. To process the temporal components in non-standard 2D+t retinal angiography sequences, we first introduce a co-registration procedure: at the pairwise level, we combine projective RANSAC with a quadratic homography transformation to map the coordinate systems between any two frames. At the joint level, we construct a hierarchical approach in order for each individual frame to be registered to the global reference intra- and inter- sequence(s). We then take a non-training approach that searches in both the spatial neighbourhood of each pixel and the filter output across varying scales to locate and link microvascular centrelines to (sub-) pixel accuracy. In essence, this \link while extract" piece-wise segmentation approach combines the local phase-invariant orientation field information with additional local phase estimates to obtain a soft classification of the centreline (sub-) pixel locations. Unlike retinal segmentation problems where vasculature is the main focus, 3D neural segmentation requires additional exibility, allowing a variety of structures of anatomical importance yet with different geometric properties to be differentiated both from the background and against other structures. Notably, cellular structures, such as Purkinje cells, neural dendrites and interneurons, all display certain elongation along their medial axes, yet each class has a characteristic shape captured by an orientation field that distinguishes it from other structures. To take this into consideration, we introduce a 5D orientation mapping to capture these orientation properties. This mapping is incorporated into the local feature map description prior to a learning machine. Extensive performance evaluations and validation of each of the techniques presented in this thesis is carried out. For retinal fundus images, we compute Receiver Operating Characteristic (ROC) curves on existing public databases (DRIVE & STARE) to assess and compare our algorithms with other benchmark methods. For 2D+t retinal angiography sequences, we compute the error metrics ("Centreline Error") of our scheme with other benchmark methods. For microscopic cortical data stacks, we present segmentation results on both surrogate data with known ground-truth and experimental rat cerebellar cortex two-photon microscopic tissue stacks.Open Acces

AVATAR - Machine Learning Pipeline Evaluation Using Surrogate Model

© 2020, The Author(s). The evaluation of machine learning (ML) pipelines is essential during automatic ML pipeline composition and optimisation. The previous methods such as Bayesian-based and genetic-based optimisation, which are implemented in Auto-Weka, Auto-sklearn and TPOT, evaluate pipelines by executing them. Therefore, the pipeline composition and optimisation of these methods requires a tremendous amount of time that prevents them from exploring complex pipelines to find better predictive models. To further explore this research challenge, we have conducted experiments showing that many of the generated pipelines are invalid, and it is unnecessary to execute them to find out whether they are good pipelines. To address this issue, we propose a novel method to evaluate the validity of ML pipelines using a surrogate model (AVATAR). The AVATAR enables to accelerate automatic ML pipeline composition and optimisation by quickly ignoring invalid pipelines. Our experiments show that the AVATAR is more efficient in evaluating complex pipelines in comparison with the traditional evaluation approaches requiring their execution

Energy-Efficient Software

The energy consumption of ICT is growing at an unprecedented pace. The main drivers for this growth are the widespread diffusion of mobile devices and the proliferation of datacenters, the most power-hungry IT facilities. In addition, it is predicted that the demand for ICT technologies and services will increase in the coming years. Finding solutions to decrease ICT energy footprint is and will be a top priority for researchers and professionals in the field. As a matter of fact, hardware technology has substantially improved throughout the years: modern ICT devices are definitely more energy efficient than their predecessors, in terms of performance per watt. However, as recent studies show, these improvements are not effectively reducing the growth rate of ICT energy consumption. This suggests that these devices are not used in an energy-efficient way. Hence, we have to look at software. Modern software applications are not designed and implemented with energy efficiency in mind. As hardware became more and more powerful (and cheaper), software developers were not concerned anymore with optimizing resource usage. Rather, they focused on providing additional features, adding layers of abstraction and complexity to their products. This ultimately resulted in bloated, slow software applications that waste hardware resources -- and consequently, energy. In this dissertation, the relationship between software behavior and hardware energy consumption is explored in detail. For this purpose, the abstraction levels of software are traversed upwards, from source code to architectural components. Empirical research methods and evidence-based software engineering approaches serve as a basis. First of all, this dissertation shows the relevance of software over energy consumption. Secondly, it gives examples of best practices and tactics that can be adopted to improve software energy efficiency, or design energy-efficient software from scratch. Finally, this knowledge is synthesized in a conceptual framework that gives the reader an overview of possible strategies for software energy efficiency, along with examples and suggestions for future research

Engineering Education and Research Using MATLAB

MATLAB is a software package used primarily in the field of engineering for signal processing, numerical data analysis, modeling, programming, simulation, and computer graphic visualization. In the last few years, it has become widely accepted as an efficient tool, and, therefore, its use has significantly increased in scientific communities and academic institutions. This book consists of 20 chapters presenting research works using MATLAB tools. Chapters include techniques for programming and developing Graphical User Interfaces (GUIs), dynamic systems, electric machines, signal and image processing, power electronics, mixed signal circuits, genetic programming, digital watermarking, control systems, time-series regression modeling, and artificial neural networks

A Methodology for Extracting Human Bodies from Still Images

Monitoring and surveillance of humans is one of the most prominent applications of today and it is expected to be part of many future aspects of our life, for safety reasons, assisted living and many others. Many efforts have been made towards automatic and robust solutions, but the general problem is very challenging and remains still open. In this PhD dissertation we examine the problem from many perspectives. First, we study the performance of a hardware architecture designed for large-scale surveillance systems. Then, we focus on the general problem of human activity recognition, present an extensive survey of methodologies that deal with this subject and propose a maturity metric to evaluate them. One of the numerous and most popular algorithms for image processing found in the field is image segmentation and we propose a blind metric to evaluate their results regarding the activity at local regions. Finally, we propose a fully automatic system for segmenting and extracting human bodies from challenging single images, which is the main contribution of the dissertation. Our methodology is a novel bottom-up approach relying mostly on anthropometric constraints and is facilitated by our research in the fields of face, skin and hands detection. Experimental results and comparison with state-of-the-art methodologies demonstrate the success of our approach

Extraction of buildings from high-resolution satellite data and airborne Lidar

Automatic building extraction is a difficult object recognition problem due to a high complexity of the scene content and the object representation. There is a dilemma to select appropriate building models to be reconstructed; the models have to be generic in order to represent a variety of building shape, whereas they also have to be specific to differentiate buildings from other objects in the scene. Therefore, a scientific challenge of building extraction lies in constructing a framework for modelling building objects with appropriate balance between generic and specific models. This thesis investigates a synergy of IKONOS satellite imagery and airborne LIDAR data, which have recently emerged as powerful remote sensing tools, and aims to develop an automatic system, which delineates building outlines with more complex shape, but by less use of geometric constraints. The method described in this thesis is a two step procedure: building detection and building description. A method of automatic building detection that can separate individual buildings from surrounding features is presented. The process is realized in a hierarchical strategy, where terrain, trees, and building objects are sequentially detected. Major research efforts are made on the development of a LIDAR filtering technique, which automatically detects terrain surfaces from a cloud of 3D laser points. The thesis also proposes a method of building description to automatically reconstruct building boundaries. A building object is generally represented as a mosaic of convex polygons. The first stage is to generate polygonal cues by a recursive intersection of both datadriven and model-driven linear features extracted from IKONOS imagery and LIDAR data. The second stage is to collect relevant polygons comprising the building object and to merge them for reconstructing the building outlines. The developed LIDAR filter was tested in a range of different landforms, and showed good results to meet most of the requirements of DTM generation and building detection. Also, the implemented building extraction system was able to successfully reconstruct the building outlines, and the accuracy of the building extraction is good enough for mapping purposes

Geographic Knowledge Graph Summarization

Geographic knowledge graphs play a significant role in the geospatial semantics paradigm for fulfilling the interoperability, the accessibility, and the conceptualization demands in geographic information science. However, due to the immense quantity of information accompanying and the enormous diversity of geographic knowledge graphs, there are many challenges that hinder the applicability and mass adoption of such useful structured knowledge. In order to tackle these challenges, this dissertation focuses on devising ways in which geographic knowledge graphs can be digested and summarized. Such a summarization task, on the one hand lifts the burden of information overload for end users, on the other hand facilitates the reduction of data storage, speeds up queries, and helps eliminate noise. The main contribution of this dissertation is that it introduces the general concept of geospatial inductive bias and explains different ways this idea can be used in the geographic knowledge graph summarization task. By decomposing the task into separate but related components, this dissertation is based upon three peer-reviewed articles which focus on the hierarchical place type structure, multimedia leaf nodes, and general relation and entity components respectively. A spatial knowledge map interface that illustrates the effectiveness of summarizing geographic knowledge graphs is presented. Throughout the dissertation, top-down knowledge engineering and bottom-up knowledge learning methods are integrated. We hope this dissertation would promote the awareness of this fascinating area and motivate researchers to investigate related questions