Towards an embedding of Graph Transformation in Intuitionistic Linear Logic

Linear logics have been shown to be able to embed both rewriting-based approaches and process calculi in a single, declarative framework. In this paper we are exploring the embedding of double-pushout graph transformations into quantified linear logic, leading to a Curry-Howard style isomorphism between graphs and transformations on one hand, formulas and proof terms on the other. With linear implication representing rules and reachability of graphs, and the tensor modelling parallel composition of graphs and transformations, we obtain a language able to encode graph transformation systems and their computations as well as reason about their properties

Reconfigurable Decorated PT Nets with Inhibitor Arcs and Transition Priorities

In this paper we deal with additional control structures for decorated PT Nets. The main contribution are inhibitor arcs and priorities. The first ensure that a marking can inhibit the firing of a transition. Inhibitor arcs force that the transition may only fire when the place is empty. an order of transitions restrict the firing, so that an transition may fire only if it has the highest priority of all enabled transitions. This concept is shown to be compatible with reconfigurable Petri nets

Simulating Multigraph Transformations Using Simple Graphs

Application of graph transformations for software verification and model transformation is an emergent field of research. In particular, graph transformation approaches provide a natural way of modelling object oriented systems and semantics of object-oriented languages.\ud \ud There exist a number of tools for graph transformations that are often specialised in a particular kind of graphs and/or graph transformation approaches, depending on the desired application domain. The main drawback of this diversity is the lack of interoperability.\ud \ud In this paper we show how (typed) multigraph production systems can be translated into (typed) simple-graph production systems. The presented construction enables the use of multigraphs with DPO transformation approach in tools that only support simple graphs with SPO transformation approach, e.g. the GROOVE tool

Inferring Chemical Reaction Patterns Using Rule Composition in Graph Grammars

Modeling molecules as undirected graphs and chemical reactions as graph rewriting operations is a natural and convenient approach tom odeling chemistry. Graph grammar rules are most naturally employed to model elementary reactions like merging, splitting, and isomerisation of molecules. It is often convenient, in particular in the analysis of larger systems, to summarize several subsequent reactions into a single composite chemical reaction. We use a generic approach for composing graph grammar rules to define a chemically useful rule compositions. We iteratively apply these rule compositions to elementary transformations in order to automatically infer complex transformation patterns. This is useful for instance to understand the net effect of complex catalytic cycles such as the Formose reaction. The automatically inferred graph grammar rule is a generic representative that also covers the overall reaction pattern of the Formose cycle, namely two carbonyl groups that can react with a bound glycolaldehyde to a second glycolaldehyde. Rule composition also can be used to study polymerization reactions as well as more complicated iterative reaction schemes. Terpenes and the polyketides, for instance, form two naturally occurring classes of compounds of utmost pharmaceutical interest that can be understood as "generalized polymers" consisting of five-carbon (isoprene) and two-carbon units, respectively

An algebraic semantics for QVT-relations check-only transformations

Fundamenta Informaticae, 114 1, Juan de Lara, Esther Guerra, An algebraic semantics for QVT-relations check-only transformations, 73-101, Copyright 2012, with permission from IOS PressQVT is the standard for model transformation defined by the OMG in the context of the Model-Driven Architecture. It is made of several transformation languages. Among them, QVT-Relations is the one with the highest level of abstraction, as it permits developing bidirectional transformations in a declarative, relational style. Unfortunately, the standard only provides a semiformal description of its semantics, which hinders analysis and has given rise to ambiguities in existing tool implementations. In order to improve this situation, we propose a formal, algebraic semantics for QVT-Relations check-only transformations, defining a notion of satisfaction of QVT-Relations specifications by models.This work has been supported by the Spanish Ministry of Science and Innovation with projects METEORIC (TIN2008-02081) and Go Lite (TIN2011-24139), and by the R&D program of the Community of Madrid with project “e-Madrid” (S2009/TIC-1650)

Superconformal field theories from crystal lattices

We propose a brane configuration for the (2+1)d, $\mathcal{N}=2$ superconformal theories (CFT$_3$) arising from M2-branes probing toric Calabi-Yau 4-fold cones, using a T-duality transformation of M-theory. We obtain intersections of M5-branes on a three-torus which form a 3d bipartite crystal lattice in a way similar to the 2d dimer models for CFT$_4$. The fundamental fields of the CFT$_3$ are M2-brane discs localized around the intersections, and the super-potential terms are identified with the atoms of the crystal. The model correctly reproduces the complete BPS spectrum of mesons and baryons.Comment: 4 pages, 4 figures, revtex; v2. references added, minor correction

Resource-Bound Quantification for Graph Transformation

Graph transformation has been used to model concurrent systems in software engineering, as well as in biochemistry and life sciences. The application of a transformation rule can be characterised algebraically as construction of a double-pushout (DPO) diagram in the category of graphs. We show how intuitionistic linear logic can be extended with resource-bound quantification, allowing for an implicit handling of the DPO conditions, and how resource logic can be used to reason about graph transformation systems

A low multiplicative complexity fast recursive DCT-2 algorithm

A fast Discrete Cosine Transform (DCT) algorithm is introduced that can be of particular interest in image processing. The main features of the algorithm are regularity of the graph and very low arithmetic complexity. The 16-point version of the algorithm requires only 32 multiplications and 81 additions. The computational core of the algorithm consists of only 17 nontrivial multiplications, the rest 15 are scaling factors that can be compensated in the post-processing. The derivation of the algorithm is based on the algebraic signal processing theory (ASP).Comment: 4 pages, 2 figure