LDDMM y GANs: Redes Generativas Antagónicas para Registro Difeomorfico.

El Registro Difeomorfico de imágenes es un problema clave para muchas aplicaciones de la Anatomía Computacional. Tradicionalmente, el registro deformable de imagen ha sido formulado como un problema variacional, resoluble mediante costosos métodos de optimización numérica. En la última década, contribuciones en la forma de nuevos métodos basados en formulaciones tradicionales están decreciendo, mientras que más modelos basados en Aprendizaje profundo están siendo desarrollados para aprender registros deformables de imágenes. En este trabajo contribuimos a esta nueva corriente proponiendo un novedoso método LDDMM para registro difeomorfico de imágenes 3D, basado en redes generativas antagónicas. Combinamos las arquitecturas de generadores y discriminadores con mejores prestaciones en registro deformable con el paradigma LDDMM. Hemos implementado con éxito tres modelos para distintas parametrizaciones de difeomorfismos, los cuales demuestran resultados competitivos en comparación con métodos del estado del arte tanto tradicionales como basados en aprendizaje profundo.<br /

A new Measure for Optimization of Field Sensor Network with Application to LiDAR

This thesis proposes a solution to the problem of modeling and optimizing the field sensor network in terms of the coverage performance. The term field sensor is referred to a class of sensors which can detect the regions in 2D/3D spaces through non-contact measurements. The most widely used field sensors include cameras, LiDAR, ultrasonic sensor, and RADAR, etc. The key challenge in the applications of field sensor networks, such as area coverage, is to develop an effective performance measure, which has to involve both sensor and environment parameters. The nature of space distribution in the case of the field sensor incurs a great deal of difficulties for such development and, hence, poses it as a very interesting research problem. Therefore, to tackle this problem, several attempts have been made in the literature. However, they have failed to address a comprehensive and applicable approach to distinctive types of field sensors (in 3D), as only coverage of a particular sensor is usually addressed at the time. In addition, no coverage model has been proposed yet for some types of field sensors such as LiDAR sensors. In this dissertation, a coverage model is obtained for the field sensors based on the transformation of sensor and task parameters into the sensor geometric model. By providing a mathematical description of the sensor’s sensing region, a performance measure is introduced which characterizes the closeness between a single sensor and target configurations. In this regard, the first contribution is developing an Infinity norm based measure which describes the target distance to the closure of the sensing region expressed by an area-based approach. The second contribution can be geometrically interpreted as mapping the sensor’s sensing region to an n-ball using a homeomorphism map and developing a performance measure. The third contribution is introducing the measurement principle and establishing the coverage model for the class of solid-state (flash) LiDAR sensors. The fourth contribution is point density analysis and developing the coverage model for the class of mechanical (prism rotating mechanism) LiDAR sensors. Finally, the effectiveness of the proposed coverage model is illustrated by simulations, experiments, and comparisons is carried out throughout the dissertation. This coverage model is a powerful tool as it applies to the variety of field sensors

10411 Abstracts Collection -- Computational Video

From 10.10.2010 to 15.10.2010, the Dagstuhl Seminar 10411 ``Computational Video \u27\u27 was held in Schloss Dagstuhl~--~Leibniz Center for Informatics. During the seminar, several participants presented their current research, and ongoing work and open problems were discussed. Abstracts of the presentations given during the seminar as well as abstracts of seminar results and ideas are put together in this paper. The first section describes the seminar topics and goals in general. Links to extended abstracts or full papers are provided, if available

Adversarial Detection of Flash Malware: Limitations and Open Issues

During the past four years, Flash malware has become one of the most insidious threats to detect, with almost 600 critical vulnerabilities targeting Adobe Flash disclosed in the wild. Research has shown that machine learning can be successfully used to detect Flash malware by leveraging static analysis to extract information from the structure of the file or its bytecode. However, the robustness of Flash malware detectors against well-crafted evasion attempts - also known as adversarial examples - has never been investigated. In this paper, we propose a security evaluation of a novel, representative Flash detector that embeds a combination of the prominent, static features employed by state-of-the-art tools. In particular, we discuss how to craft adversarial Flash malware examples, showing that it suffices to manipulate the corresponding source malware samples slightly to evade detection. We then empirically demonstrate that popular defense techniques proposed to mitigate evasion attempts, including re-training on adversarial examples, may not always be sufficient to ensure robustness. We argue that this occurs when the feature vectors extracted from adversarial examples become indistinguishable from those of benign data, meaning that the given feature representation is intrinsically vulnerable. In this respect, we are the first to formally define and quantitatively characterize this vulnerability, highlighting when an attack can be countered by solely improving the security of the learning algorithm, or when it requires also considering additional features. We conclude the paper by suggesting alternative research directions to improve the security of learning-based Flash malware detectors

A low-cost smartphone-based platform for highly sensitive point-of-care testing with persistent luminescent phosphors

Through their computational power and connectivity, smartphones are poised to rapidly expand telemedicine and transform healthcare by enabling better personal health monitoring and rapid diagnostics. Recently, a variety of platforms have been developed to enable smartphone-based point-of-care testing using imaging-based readout with the smartphone camera as the detector. Fluorescent reporters have been shown to improve the sensitivity of assays over colorimetric labels, but fluorescence readout necessitates incorporating optical hardware into the detection system, adding to the cost and complexity of the device. Here we present a simple, low-cost smartphone-based detection platform for highly sensitive luminescence imaging readout of point-of-care tests run with persistent luminescent phosphors as reporters. The extremely bright and long-lived emission of persistent phosphors allows sensitive analyte detection with a smartphone by a facile time-gated imaging strategy. Phosphors are first briefly excited with the phone's camera flash, followed by switching off the flash, and subsequent imaging of phosphor luminescence with the camera. Using this approach, we demonstrate detection of human chorionic gonadotropin using a lateral flow assay and the smartphone platform with strontium aluminate nanoparticles as reporters, giving a detection limit of ?45 pg mL?1 (1.2 pM) in buffer. Time-gated imaging on a smartphone can be readily adapted for sensitive and potentially quantitative testing using other point-of-care formats, and is workable with a variety of persistent luminescent materials

Practical SVBRDF Acquisition of 3D Objects with Unstructured Flash Photography

Capturing spatially-varying bidirectional reflectance distribution functions (SVBRDFs) of 3D objects with just a single, hand-held camera (such as an off-the-shelf smartphone or a DSLR camera) is a difficult, open problem. Previous works are either limited to planar geometry, or rely on previously scanned 3D geometry, thus limiting their practicality. There are several technical challenges that need to be overcome: First, the built-in flash of a camera is almost colocated with the lens, and at a fixed position; this severely hampers sampling procedures in the light-view space. Moreover, the near-field flash lights the object partially and unevenly. In terms of geometry, existing multiview stereo techniques assume diffuse reflectance only, which leads to overly smoothed 3D reconstructions, as we show in this paper. We present a simple yet powerful framework that removes the need for expensive, dedicated hardware, enabling practical acquisition of SVBRDF information from real-world, 3D objects with a single, off-the-shelf camera with a built-in flash. In addition, by removing the diffuse reflection assumption and leveraging instead such SVBRDF information, our method outputs high-quality 3D geometry reconstructions, including more accurate high-frequency details than state-of-the-art multiview stereo techniques. We formulate the joint reconstruction of SVBRDFs, shading normals, and 3D geometry as a multi-stage, iterative inverse-rendering reconstruction pipeline. Our method is also directly applicable to any existing multiview 3D reconstruction technique. We present results of captured objects with complex geometry and reflectance; we also validate our method numerically against other existing approaches that rely on dedicated hardware, additional sources of information, or both

Field-based Robot Phenotyping of Sorghum Plant Architecture using Stereo Vision

Sorghum (Sorghum bicolor) is known as a major feedstock for biofuel production. To improve its biomass yield through genetic research, manually measuring yield component traits (e.g. plant height, stem diameter, leaf angle, leaf area, leaf number, and panicle size) in the field is the current best practice. However, such laborious and time‐consuming tasks have become a bottleneck limiting experiment scale and data acquisition frequency. This paper presents a high‐throughput field‐based robotic phenotyping system which performed side‐view stereo imaging for dense sorghum plants with a wide range of plant heights throughout the growing season. Our study demonstrated the suitability of stereo vision for field‐based three‐dimensional plant phenotyping when recent advances in stereo matching algorithms were incorporated. A robust data processing pipeline was developed to quantify the variations or morphological traits in plant architecture, which included plot‐based plant height, plot‐based plant width, convex hull volume, plant surface area, and stem diameter (semiautomated). These image‐derived measurements were highly repeatable and showed high correlations with the in‐field manual measurements. Meanwhile, manually collecting the same traits required a large amount of manpower and time compared to the robotic system. The results demonstrated that the proposed system could be a promising tool for large‐scale field‐based high‐throughput plant phenotyping of bioenergy crops