A Quorum Sensing Inspired Algorithm for Dynamic Clustering

Quorum sensing is a decentralized biological process, through which a community of cells with no global awareness coordinate their functional behaviors based solely on cell-medium interactions and local decisions. This paper draws inspirations from quorum sensing and colony competition to derive a new algorithm for data clustering. The algorithm treats each data as a single cell, and uses knowledge of local connectivity to cluster cells into multiple colonies simultaneously. It simulates auto-inducers secretion in quorum sensing to tune the influence radius for each cell. At the same time, sparsely distributed core cells spread their influences to form colonies, and interactions between colonies eventually determine each cell's identity. The algorithm has the flexibility to analyze not only static but also time-varying data, which surpasses the capacity of many existing algorithms. Its stability and convergence properties are established. The algorithm is tested on several applications, including both synthetic and real benchmarks data sets, alleles clustering, community detection, image segmentation. In particular, the algorithm's distinctive capability to deal with time-varying data allows us to experiment it on novel applications such as robotic swarms grouping and switching model identification. We believe that the algorithm's promising performance would stimulate many more exciting applications

Community landscapes: an integrative approach to determine overlapping network module hierarchy, identify key nodes and predict network dynamics

Background: Network communities help the functional organization and evolution of complex networks. However, the development of a method, which is both fast and accurate, provides modular overlaps and partitions of a heterogeneous network, has proven to be rather difficult. Methodology/Principal Findings: Here we introduce the novel concept of ModuLand, an integrative method family determining overlapping network modules as hills of an influence function-based, centrality-type community landscape, and including several widely used modularization methods as special cases. As various adaptations of the method family, we developed several algorithms, which provide an efficient analysis of weighted and directed networks, and (1) determine pervasively overlapping modules with high resolution; (2) uncover a detailed hierarchical network structure allowing an efficient, zoom-in analysis of large networks; (3) allow the determination of key network nodes and (4) help to predict network dynamics. Conclusions/Significance: The concept opens a wide range of possibilities to develop new approaches and applications including network routing, classification, comparison and prediction.Comment: 25 pages with 6 figures and a Glossary + Supporting Information containing pseudo-codes of all algorithms used, 14 Figures, 5 Tables (with 18 module definitions, 129 different modularization methods, 13 module comparision methods) and 396 references. All algorithms can be downloaded from this web-site: http://www.linkgroup.hu/modules.ph