Fast and effective estimation of narrowband components for bioelectrical signals

In this paper we propose a novel approach for estimating narrowband components from bioelectrical signals. The approach is based on the notion of modulated quadratic variation, introduced as a measure of variability for narrowband signals. The algorithm is the closed-form solution to a constrained convex optimization problem, where narrowband components are estimated tracking the slow variations around a central frequency in the measured signal. The approach is general and can be applied to any bioelectrical signal, either for diagnostic or denoising purposes. In this paper we assess its performance on ECG and EMG signals. Numerical results show its effectiveness in removing narrowband artifacts, such as power-line interference, while preserving signal morphology. It greatly outperforms conventional notch filtering. Moreover, it is also very fast, as its computational complexity is linear in the size of the vector to process

Wired, wireless and wearable bioinstrumentation for high-precision recording of bioelectrical signals in bidirectional neural interfaces

It is widely accepted by the scientific community that bioelectrical signals, which can be used for the identification of neurophysiological biomarkers indicative of a diseased or pathological state, could direct patient treatment towards more effective therapeutic strategies. However, the design and realisation of an instrument that can precisely record weak bioelectrical signals in the presence of strong interference stemming from a noisy clinical environment is one of the most difficult challenges associated with the strategy of monitoring bioelectrical signals for diagnostic purposes. Moreover, since patients often have to cope with the problem of limited mobility being connected to bulky and mains-powered instruments, there is a growing demand for small-sized, high-performance and ambulatory biopotential acquisition systems in the Intensive Care Unit (ICU) and in High-dependency wards. Furthermore, electrical stimulation of specific target brain regions has been shown to alleviate symptoms of neurological disorders, such as Parkinson’s disease, essential tremor, dystonia, epilepsy etc. In recent years, the traditional practice of continuously stimulating the brain using static stimulation parameters has shifted to the use of disease biomarkers to determine the intensity and timing of stimulation. The main motivation behind closed-loop stimulation is minimization of treatment side effects by providing only the necessary stimulation required within a certain period of time, as determined from a guiding biomarker. Hence, it is clear that high-quality recording of local field potentials (LFPs) or electrocorticographic (ECoG) signals during deep brain stimulation (DBS) is necessary to investigate the instantaneous brain response to stimulation, minimize time delays for closed-loop neurostimulation and maximise the available neural data. To our knowledge, there are no commercial, small, battery-powered, wearable and wireless recording-only instruments that claim the capability of recording ECoG signals, which are of particular importance in closed-loop DBS and epilepsy DBS. In addition, existing recording systems lack the ability to provide artefact-free high-frequency (> 100 Hz) LFP recordings during DBS in real time primarily because of the contamination of the neural signals of interest by the stimulation artefacts. To address the problem of limited mobility often encountered by patients in the clinic and to provide a wide variety of high-precision sensor data to a closed-loop neurostimulation platform, a low-noise (8 nV/√Hz), eight-channel, battery-powered, wearable and wireless multi-instrument (55 × 80 mm2) was designed and developed. The performance of the realised instrument was assessed by conducting both ex vivo and in vivo experiments. The combination of desirable features and capabilities of this instrument, namely its small size (~one business card), its enhanced recording capabilities, its increased processing capabilities, its manufacturability (since it was designed using discrete off-the-shelf components), the wide bandwidth it offers (0.5 – 500 Hz) and the plurality of bioelectrical signals it can precisely record, render it a versatile tool to be utilized in a wide range of applications and environments. Moreover, in order to offer the capability of sensing and stimulating via the same electrode, novel real-time artefact suppression methods that could be used in bidirectional (recording and stimulation) system architectures are proposed and validated. More specifically, a novel, low-noise and versatile analog front-end (AFE), which uses a high-order (8th) analog Chebyshev notch filter to suppress the artefacts originating from the stimulation frequency, is presented. After defining the system requirements for concurrent LFP recording and DBS artefact suppression, the performance of the realised AFE is assessed by conducting both in vitro and in vivo experiments using unipolar and bipolar DBS (monophasic pulses, amplitude ranging from 3 to 6 V peak-to-peak, frequency 140 Hz and pulse width 100 µs). Under both in vitro and in vivo experimental conditions, the proposed AFE provided real-time, low-noise and artefact-free LFP recordings (in the frequency range 0.5 – 250 Hz) during stimulation. Finally, a family of tunable hardware filter designs and a novel method for real-time artefact suppression that enables wide-bandwidth biosignal recordings during stimulation are also presented. This work paves the way for the development of miniaturized research tools for closed-loop neuromodulation that use a wide variety of bioelectrical signals as control signals.Open Acces

Artefacts Detection in EEG Signals

Chapter 11 demonstrates the potential of artefacts detection approach in electro- encephalography, using the Hampel filter to correct different types of artefacts. Also, a complete state-of-the-art is introduced along with a recommended bibliography to research these topics

Increasing Signal to Noise Ratio and Minimising Artefacts in Biomedical Instrumentation Systems

The research work described in this thesis was concerned with finding a novel method of minimising motion artefacts in biomedical instrumentation systems. The proposed solution, an Analog Frontend (AFE), was designed to detect any vertical (Y-Plane) or horizontal (X-Plane) movement of the electrode using two strain gauges, which were separated by 90° and fitted onto the electrode. The detected motion was fed back to the system for the removal of any motion artefact. The research started by emphasising the importance of minimising motion artefacts from biomedical signals and explaining how important it is for a clinical misinterpretation of the results. Hence, various motion artefact minimisation techniques undertaken by other researchers in the field were reviewed. This study covered different sources of artefacts, including the 40kHz powerline interference (PLI), 50/60kHz common-mode noise, white noise, and motion artefacts. The system was fully developed and tested and was firstly simulated using MATLAB Simulink tools to prove the effectiveness of the system before starting the implementation and build phase in the lab. The AFE system successfully produced a clean output signal, achieving an average correlation coefficient of 0.995. Also, the system output had a 98% SNR similarity with the clean source signal. Further, the system was then built and tested in the lab and successfully minimised the motion artefacts, achieving an average correlation coefficient of 0.974. Additionally, the final output had a 97.8% SNR similarity with the clean source signal. A novel test rig was developed to test the system with strain gauges. The system was able to remove the detected signal from the test rig and had an average correlation coefficient of 0.957. Lastly, the final output had a 94.2% SNR similarity with the clean source signal

Novel Approaches to ECG-Based Modeling and Characterization of Atrial Fibrillation

This thesis deals with signal processing algorithms for analysis of the electrocardiogram (ECG) during atrial fibrillation (AF). Such analysis can be used for diagnosing patients, and for monitoring and predicting their response to various treatment. The thesis comprises an introduction and five papers describing methods for ECG-based modeling and characterization of AF. Paper I--IV deal with methods for characterization of the atrial activity, whereas Paper V deals with modeling of the ventricular response, both problems with the assumption that AF is present. In Paper I, a number of measures characterizing the atrial activity in the ECG, obtained using time-frequency analysis as well as nonlinear methods, are evaluated for their ability to predict spontaneous termination of AF. The AF frequency, i.e, the repetition rate of the atrial fibrillatory waves of the ECG, proved to be a significant factor for discrimination between terminating and non-terminating AF. Noise is a common problem in ECG signals, particularly in long-term ambulatory recordings. Hence, robust algorithms for analysis and characterization are required. In Paper II, a robust method for tracking the AF frequency in noisy signals is presented. The method is based on a hidden Markov model (HMM), which takes the harmonic pattern of the atrial activity into account. Using the HMM-based method, the average RMS error of the frequency estimates at high noise levels was significantly lower compared to existing methods. In Paper III, the HMM-based method is employed for analysis of 24-h ambulatory ECG signals in order to explore circadian variation in AF frequency. Circadian variations reflect autonomic modulation; attenuation or absence of such variations may help to diagnose patients. Methods based on curve fitting, autocorrelation, and joint variation, respectively, are employed to quantify circadian variations, showing that it is present in most patients with long-standing persistent AF, although the short-term variation is considerable. In Paper IV, 24-h ambulatory ECG recordings with paroxysmal and persistent AF are analyzed using an entropy-based method for characterization of the atrial activity. Short segments are classified based on these measures, showing that it is feasible to distinguish between patient with paroxysmal and persistent AF from 10-s ECGs; the average classification rate was above 95%. The ventricular response during AF is mainly determined by the AV nodal blocking of atrial impulses. In Paper V, a new model-based approach for analysis of the ventricular response during AF is proposed. The model integrates physiological properties of the AV node and the atrial fibrillatory rate; the model parameters can be estimated from ECG signals. Results show that ventricular response is sufficiently represented by the estimated model in a majority of the recordings; in 85.7% of the analyzed 30-min segments the model fit was considered accurate, and that changes of AV nodal properties caused by autonomic modulation could be tracked through the estimated model parameters. In summary, the work within this thesis contributes with new methods for non-invasive analysis of AF, which can be used to tailor and evaluate different strategies for AF treatment

A morphology-preserving algorithm for denoising of EMG-contaminated ECG signals

Goal: Clinical interpretation of an electrocardiogram (ECG) can be detrimentally affected by noise. Removal of the electromyographic (EMG) noise is particularly challenging due to its spectral overlap with the QRS complex. The existing EMG-denoising algorithms often distort signal morphology, thus obscuring diagnostically relevant information. Methods: Here, a new iterative regeneration method (IRM) for efficient EMG-noise suppression is proposed. The main hypothesis is that the temporary removal of the dominant ECG components enables extraction of the noise with the minimum alteration to the signal. The method is validated on SimEMG database of simultaneously recorded reference and noisy signals, MIT-BIH arrhythmia database and synthesized ECG signals, both with the noise from MIT Noise Stress Test Database. Results: IRM denoising and morphology-preserving performance is superior to the wavelet- and FIR-based benchmark methods. Conclusions : IRM is reliable, computationally non-intensive, fast and applicable to any number of ECG channels recorded by mobile or standard ECG devices

Early Disease Detection by Extracting Features of Biomedical Signals

Elderly people face a lot of health problems in day to day life due to old age and so many reasons. Therefore a regular health check-up is needed for them which is much more expensive and cannot be afforded by many people. Again the diagnosis is much more complicated to understand and in many cases there is a chance of mistreatment. There is another chance of delay in the detection of disease and late treatment causing risk in their lives. So, the disease should be detected in the early stage for lower cost and lower risk in life. The present work is related to the different physiological parameters of a human being that are to be measured to accurately diagnose the related disease. Though there are numerous physiological parameters, this work emphasizes on some of the most common physiological parameters such as blood pressure, heart rate and ECG which are of primary importance to elderly people. Accurate measurement and analysis of these parameters can lead to diagnose of several lethal disease. In this work, the method of measurement and analysis of these physiological parameters are described. The simulation, processing and analyses of these signals are also done in the work. The prime objective of the research work is to analyze and extract the features of ECG signal and blood pressure signal for early diagnosis of life threatening diseases

Quantification of Ventricular Repolarization Dispersion Using Digital Processing of the Surface ECG

Digital processing of electrocardiographic records was one of the first applications of signal processing on medicine. There are many ways to analyze and study electrical cardiac activity using the surface electrocardiogram (ECG) and nowadays a good clinical diagnostic and prevention of cardiac risk are the principal goal to be achieved. One aim of digital processing of ECG signals has been quantification of ventricular repolarization dispersion (VRD), phenomenon which mainly is determined by heterogeneity of action potential durations (APD) in different myocardial regions. The APD differs not only between myocytes of apex and the base of both ventricles, but those of endocardial and epicardial surfaces (transmural dispersion) and between both ventricles. Also, it was demonstrated that several electrophysiologically and functionally different myocardial cells, like epicardial, endocardial and mid-myocardial M cells. The APD inequalities develop global and/or local voltage gradients that play an important role in the inscription of ECG T-wave morphology. In this way, we can assume that T-wave is a direct expression of ventricular repolarization inhomogeneities on surface ECG. Experimental and clinical studies have demonstrated a relationship between VRD and severe ventricular arrhythmias. In addition, patients having increased VRD values have a higher risk of developing reentrant arrhythmias. Frequently the heart answer to several pathological states produced an increase of VRD; this phenomenon may develop into malignant ventricular arrhythmia (MVA) and/or sudden cardiac death (SCD). Moreover, it has been showed that the underlying mechanisms in MVA and/or SCD are cardiac re-entry, increased automation, influence of autonomic nervous system and arrhythmogenic substrates linked with cardiac pathologies. These cardiac alterations could presented ischemia, hypothermia, electrolyte imbalance, long QT syndrome, autonomic system effects and others. Digital processing of ECG has been proved to be useful for cardiac risk assessment, with additional advantages like of being non invasive treatments and applicable to the general population. With the aim to identify high cardiac risk patients, the researchers have been tried to quantify the VRD with different parameters obtained by mathematic-computational processing of the surface ECG. These parameters are based in detecting changes of T-wave intervals and T-wave morphology during cardiac pathologies, linking these changes with VRD. In this chapter, we have presented a review of VRD indexes based on digital processing of ECG signals to quantify cardiac risk. The chapter is organized as follows: Section 2 explains ECG preprocessing and delineation of fiducial points. In Section 3, indexes of VRD quantification, such as: QT interval dispersion, QT interval variability and T-wave duration, are described. In Section 4, different repolarization indexes describing T-wave morphology and energy are examined, including complexity of repolarization, T-wave residuum, angle between the depolarization and repolarization dominant vectors, micro T-wave alternans, T-wave area and amplitude and T-wave spectral variability. Finally, in Section 5 conclusions are presented.Fil: Vinzio Maggio, Ana Cecilia. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Saavedra 15. Instituto Argentino de Matemática Alberto Calderón; ArgentinaFil: Bonomini, Maria Paula. Universidad de Buenos Aires. Facultad de Ingeniería. Instituto de Ingeniería Biomédica; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Laciar Leber, Eric. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de San Juan. Facultad de Ingeniería; ArgentinaFil: Arini, Pedro David. Universidad de Buenos Aires. Facultad de Ingeniería. Instituto de Ingeniería Biomédica; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Saavedra 15. Instituto Argentino de Matemática Alberto Calderón; Argentin