Toward High-Performance Computing and Big Data Analytics Convergence: The Case of Spark-DIY

Convergence between high-performance computing (HPC) and big data analytics (BDA) is currently an established research area that has spawned new opportunities for unifying the platform layer and data abstractions in these ecosystems. This work presents an architectural model that enables the interoperability of established BDA and HPC execution models, reflecting the key design features that interest both the HPC and BDA communities, and including an abstract data collection and operational model that generates a unified interface for hybrid applications. This architecture can be implemented in different ways depending on the process- and data-centric platforms of choice and the mechanisms put in place to effectively meet the requirements of the architecture. The Spark-DIY platform is introduced in the paper as a prototype implementation of the architecture proposed. It preserves the interfaces and execution environment of the popular BDA platform Apache Spark, making it compatible with any Spark-based application and tool, while providing efficient communication and kernel execution via DIY, a powerful communication pattern library built on top of MPI. Later, Spark-DIY is analyzed in terms of performance by building a representative use case from the hydrogeology domain, EnKF-HGS. This application is a clear example of how current HPC simulations are evolving toward hybrid HPC-BDA applications, integrating HPC simulations within a BDA environment.This work was supported in part by the Spanish Ministry of Economy, Industry and Competitiveness under Grant TIN2016-79637-P(toward Unification of HPC and Big Data Paradigms), in part by the Spanish Ministry of Education under Grant FPU15/00422 TrainingProgram for Academic and Teaching Staff Grant, in part by the Advanced Scientific Computing Research, Office of Science, U.S.Department of Energy, under Contract DE-AC02-06CH11357, and in part by the DOE with under Agreement DE-DC000122495,Program Manager Laura Biven

HPC Cloud for Scientific and Business Applications: Taxonomy, Vision, and Research Challenges

High Performance Computing (HPC) clouds are becoming an alternative to on-premise clusters for executing scientific applications and business analytics services. Most research efforts in HPC cloud aim to understand the cost-benefit of moving resource-intensive applications from on-premise environments to public cloud platforms. Industry trends show hybrid environments are the natural path to get the best of the on-premise and cloud resources---steady (and sensitive) workloads can run on on-premise resources and peak demand can leverage remote resources in a pay-as-you-go manner. Nevertheless, there are plenty of questions to be answered in HPC cloud, which range from how to extract the best performance of an unknown underlying platform to what services are essential to make its usage easier. Moreover, the discussion on the right pricing and contractual models to fit small and large users is relevant for the sustainability of HPC clouds. This paper brings a survey and taxonomy of efforts in HPC cloud and a vision on what we believe is ahead of us, including a set of research challenges that, once tackled, can help advance businesses and scientific discoveries. This becomes particularly relevant due to the fast increasing wave of new HPC applications coming from big data and artificial intelligence.Comment: 29 pages, 5 figures, Published in ACM Computing Surveys (CSUR

Straggler Root-Cause and Impact Analysis for Massive-scale Virtualized Cloud Datacenters

Increased complexity and scale of virtualized distributed systems has resulted in the manifestation of emergent phenomena substantially affecting overall system performance. This phenomena is known as “Long Tail”, whereby a small proportion of task stragglers significantly impede job completion time. While work focuses on straggler detection and mitigation, there is limited work that empirically studies straggler root-cause and quantifies its impact upon system operation. Such analysis is critical to ascertain in-depth knowledge of straggler occurrence for focusing developmental and research efforts towards solving the Long Tail challenge. This paper provides an empirical analysis of straggler root-cause within virtualized Cloud datacenters; we analyze two large-scale production systems to quantify the frequency and impact stragglers impose, and propose a method for conducting root-cause analysis. Results demonstrate approximately 5% of task stragglers impact 50% of total jobs for batch processes, and 53% of stragglers occur due to high server resource utilization. We leverage these findings to propose a method for extreme straggler detection through a combination of offline execution patterns modeling and online analytic agents to monitor tasks at runtime. Experiments show the approach is capable of detecting stragglers less than 11% into their execution lifecycle with 95% accuracy for short duration jobs

Big Data Analytics on Traditional HPC Infrastructure Using Two-Level Storage

Data-intensive computing has become one of the major workloads on traditional high-performance computing (HPC) clusters. Currently, deploying data-intensive computing software framework on HPC clusters still faces performance and scalability issues. In this paper, we develop a new two-level storage system by integrating Tachyon, an in-memory file system with OrangeFS, a parallel file system. We model the I/O throughputs of four storage structures: HDFS, OrangeFS, Tachyon and two-level storage. We conduct computational experiments to characterize I/O throughput behavior of two-level storage and compare its performance to that of HDFS and OrangeFS, using TeraSort benchmark. Theoretical models and experimental tests both show that the two-level storage system can increase the aggregate I/O throughputs. This work lays a solid foundation for future work in designing and building HPC systems that can provide a better support on I/O intensive workloads with preserving existing computing resources.Comment: Submitted to SC15, 8 pages, 7 figures, 3 table

Computing at massive scale: Scalability and dependability challenges

Large-scale Cloud systems and big data analytics frameworks are now widely used for practical services and applications. However, with the increase of data volume, together with the heterogeneity of workloads and resources, and the dynamic nature of massive user requests, the uncertainties and complexity of resource management and service provisioning increase dramatically, often resulting in poor resource utilization, vulnerable system dependability, and user-perceived performance degradations. In this paper we report our latest understanding of the current and future challenges in this particular area, and discuss both existing and potential solutions to the problems, especially those concerned with system efficiency, scalability and dependability. We first introduce a data-driven analysis methodology for characterizing the resource and workload patterns and tracing performance bottlenecks in a massive-scale distributed computing environment. We then examine and analyze several fundamental challenges and the solutions we are developing to tackle them, including for example incremental but decentralized resource scheduling, incremental messaging communication, rapid system failover, and request handling parallelism. We integrate these solutions with our data analysis methodology in order to establish an engineering approach that facilitates the optimization, tuning and verification of massive-scale distributed systems. We aim to develop and offer innovative methods and mechanisms for future computing platforms that will provide strong support for new big data and IoE (Internet of Everything) applications

Big Data in the Cloud: A Survey

Big Data has become a hot topic across several business areas requiring the storage and processing of huge volumes of data. Cloud computing leverages Big Data by providing high storage and processing capabilities and enables corporations to consume resources in a pay-as-you-go model making clouds the optimal environment for storing and processing huge quantities of data. By using virtualized resources, Cloud can scale very easily, be highly available and provide massive storage capacity and processing power. This paper surveys existing databases models to store and process Big Data within a Cloud environment. Particularly, we detail the following traditional NoSQL databases: BigTable, Cassandra, DynamoDB, HBase, Hypertable, and MongoDB. The MapReduce framework and its developments Apache Spark, HaLoop, Twister, and other alternatives such as Apache Giraph, GraphLab, Pregel and MapD - a novel platform that uses GPU processing to accelerate Big Data processing - are also analyzed. Finally, we present two case studies that demonstrate the successful use of Big Data within Cloud environments and the challenges that must be addressed in the future