High-Performance Cloud Computing: A View of Scientific Applications

Scientific computing often requires the availability of a massive number of computers for performing large scale experiments. Traditionally, these needs have been addressed by using high-performance computing solutions and installed facilities such as clusters and super computers, which are difficult to setup, maintain, and operate. Cloud computing provides scientists with a completely new model of utilizing the computing infrastructure. Compute resources, storage resources, as well as applications, can be dynamically provisioned (and integrated within the existing infrastructure) on a pay per use basis. These resources can be released when they are no more needed. Such services are often offered within the context of a Service Level Agreement (SLA), which ensure the desired Quality of Service (QoS). Aneka, an enterprise Cloud computing solution, harnesses the power of compute resources by relying on private and public Clouds and delivers to users the desired QoS. Its flexible and service based infrastructure supports multiple programming paradigms that make Aneka address a variety of different scenarios: from finance applications to computational science. As examples of scientific computing in the Cloud, we present a preliminary case study on using Aneka for the classification of gene expression data and the execution of fMRI brain imaging workflow.Comment: 13 pages, 9 figures, conference pape

Preemptive Thread Block Scheduling with Online Structural Runtime Prediction for Concurrent GPGPU Kernels

Recent NVIDIA Graphics Processing Units (GPUs) can execute multiple kernels concurrently. On these GPUs, the thread block scheduler (TBS) uses the FIFO policy to schedule their thread blocks. We show that FIFO leaves performance to chance, resulting in significant loss of performance and fairness. To improve performance and fairness, we propose use of the preemptive Shortest Remaining Time First (SRTF) policy instead. Although SRTF requires an estimate of runtime of GPU kernels, we show that such an estimate of the runtime can be easily obtained using online profiling and exploiting a simple observation on GPU kernels' grid structure. Specifically, we propose a novel Structural Runtime Predictor. Using a simple Staircase model of GPU kernel execution, we show that the runtime of a kernel can be predicted by profiling only the first few thread blocks. We evaluate an online predictor based on this model on benchmarks from ERCBench, and find that it can estimate the actual runtime reasonably well after the execution of only a single thread block. Next, we design a thread block scheduler that is both concurrent kernel-aware and uses this predictor. We implement the SRTF policy and evaluate it on two-program workloads from ERCBench. SRTF improves STP by 1.18x and ANTT by 2.25x over FIFO. When compared to MPMax, a state-of-the-art resource allocation policy for concurrent kernels, SRTF improves STP by 1.16x and ANTT by 1.3x. To improve fairness, we also propose SRTF/Adaptive which controls resource usage of concurrently executing kernels to maximize fairness. SRTF/Adaptive improves STP by 1.12x, ANTT by 2.23x and Fairness by 2.95x compared to FIFO. Overall, our implementation of SRTF achieves system throughput to within 12.64% of Shortest Job First (SJF, an oracle optimal scheduling policy), bridging 49% of the gap between FIFO and SJF.Comment: 14 pages, full pre-review version of PACT 2014 poste

Model-driven development of data intensive applications over cloud resources

The proliferation of sensors over the last years has generated large amounts of raw data, forming data streams that need to be processed. In many cases, cloud resources are used for such processing, exploiting their flexibility, but these sensor streaming applications often need to support operational and control actions that have real-time and low-latency requirements that go beyond the cost effective and flexible solutions supported by existing cloud frameworks, such as Apache Kafka, Apache Spark Streaming, or Map-Reduce Streams. In this paper, we describe a model-driven and stepwise refinement methodological approach for streaming applications executed over clouds. The central role is assigned to a set of Petri Net models for specifying functional and non-functional requirements. They support model reuse, and a way to combine formal analysis, simulation, and approximate computation of minimal and maximal boundaries of non-functional requirements when the problem is either mathematically or computationally intractable. We show how our proposal can assist developers in their design and implementation decisions from a performance perspective. Our methodology allows to conduct performance analysis: The methodology is intended for all the engineering process stages, and we can (i) analyse how it can be mapped onto cloud resources, and (ii) obtain key performance indicators, including throughput or economic cost, so that developers are assisted in their development tasks and in their decision taking. In order to illustrate our approach, we make use of the pipelined wavefront array

Enhancing Job Scheduling of an Atmospheric Intensive Data Application

Nowadays, e-Science applications involve great deal of data to have more accurate analysis. One of its application domains is the Radio Occultation which manages satellite data. Grid Processing Management is a physical infrastructure geographically distributed based on Grid Computing, that is implemented for the overall processing Radio Occultation analysis. After a brief description of algorithms adopted to characterize atmospheric profiles, the paper presents an improvement of job scheduling in order to decrease processing time and optimize resource utilization. Extension of grid computing capacity is implemented by virtual machines in existing physical Grid in order to satisfy temporary job requests. Also scheduling plays an important role in the infrastructure that is handled by a couple of schedulers which are developed to manage data automaticall

Adaptive Parallelism for Coupled, Multithreaded Message-Passing Programs

Hybrid parallel programming models that combine message passing (MP) and shared- memory multithreading (MT) are becoming more popular, especially with applications requiring higher degrees of parallelism and scalability. Consequently, coupled parallel programs, those built via the integration of independently developed and optimized software libraries linked into a single application, increasingly comprise message-passing libraries with differing preferred degrees of threading, resulting in thread-level heterogeneity. Retroactively matching threading levels between independently developed and maintained libraries is difficult, and the challenge is exacerbated because contemporary middleware services provide only static scheduling policies over entire program executions, necessitating suboptimal, over-subscribed or under-subscribed, configurations. In coupled applications, a poorly configured component can lead to overall poor application performance, suboptimal resource utilization, and increased time-to-solution. So it is critical that each library executes in a manner consistent with its design and tuning for a particular system architecture and workload. Therefore, there is a need for techniques that address dynamic, conflicting configurations in coupled multithreaded message-passing (MT-MP) programs. Our thesis is that we can achieve significant performance improvements over static under-subscribed approaches through reconfigurable execution environments that consider compute phase parallelization strategies along with both hardware and software characteristics. In this work, we present new ways to structure, execute, and analyze coupled MT- MP programs. Our study begins with an examination of contemporary approaches used to accommodate thread-level heterogeneity in coupled MT-MP programs. Here we identify potential inefficiencies in how these programs are structured and executed in the high-performance computing domain. We then present and evaluate a novel approach for accommodating thread-level heterogeneity. Our approach enables full utilization of all available compute resources throughout an application’s execution by providing programmable facilities with modest overheads to dynamically reconfigure runtime environments for compute phases with differing threading factors and affinities. Our performance results show that for a majority of the tested scientific workloads our approach and corresponding open-source reference implementation render speedups greater than 50 % over the static under-subscribed baseline. Motivated by our examination of reconfigurable execution environments and their memory overhead, we also study the memory attribution problem: the inability to predict or evaluate during runtime where the available memory is used across the software stack comprising the application, reusable software libraries, and supporting runtime infrastructure. Specifically, dynamic adaptation requires runtime intervention, which by its nature introduces additional runtime and memory overhead. To better understand the latter, we propose and evaluate a new way to quantify component-level memory usage from unmodified binaries dynamically linked to a message-passing communication library. Our experimental results show that our approach and corresponding implementation accurately measure memory resource usage as a function of time, scale, communication workload, and software or hardware system architecture, clearly distinguishing between application and communication library usage at a per-process level

The state-of-the-art in personalized recommender systems for social networking

With the explosion of Web 2.0 application such as blogs, social and professional networks, and various other types of social media, the rich online information and various new sources of knowledge flood users and hence pose a great challenge in terms of information overload. It is critical to use intelligent agent software systems to assist users in finding the right information from an abundance of Web data. Recommender systems can help users deal with information overload problem efficiently by suggesting items (e.g., information and products) that match users’ personal interests. The recommender technology has been successfully employed in many applications such as recommending films, music, books, etc. The purpose of this report is to give an overview of existing technologies for building personalized recommender systems in social networking environment, to propose a research direction for addressing user profiling and cold start problems by exploiting user-generated content newly available in Web 2.0

An energy-aware scheduling approach for resource-intensive jobs using smart mobile devices as resource providers

The ever-growing adoption of smart mobile devices is a worldwide phenomenon that positions smart-phones and tablets as primary devices for communication and Internet access. In addition to this, the computing capabilities of such devices, often underutilized by their owners, are in continuous improvement. Today, smart mobile devices have multi-core CPUs, several gigabytes of RAM, and ability to communicate through several wireless networking technologies. These facts caught the attention of researchers who have proposed to leverage smart mobile devices aggregated computing capabilities for running resource intensive software. However, such idea is conditioned by key features, named singularities in the context of this thesis, that characterize resource provision with smart mobile devices.These are the ability of devices to change location (user mobility), the shared or non-dedicated nature of resources provided (lack of ownership) and the limited operation time given by the finite energy source (exhaustible resources).Existing proposals materializing this idea differ in the singularities combinations they target and the way they address each singularity, which make them suitable for distinct goals and resource exploitation opportunities. The latter are represented by real life situations where resources provided by groups of smart mobile devices can be exploited, which in turn are characterized by a social context and a networking support used to link and coordinate devices. The behavior of people in a given social context configure a special availability level of resources, while the underlying networking support imposes restrictionson how information flows, computational tasks are distributed and results are collected. The latter constitutes one fundamental difference of proposals mainly because each networking support ?i.e., ad-hoc and infrastructure based? has its own application scenarios. Aside from the singularities addressed and the networking support utilized, the weakest point of most of the proposals is their practical applicability. The performance achieved heavily relies on the accuracy with which task information, including execution time and/or energy required for execution, is provided to feed the resource allocator.The expanded usage of wireless communication infrastructure in public and private buildings, e.g., shoppings, work offices, university campuses and so on, constitutes a networking support that can be naturally re-utilized for leveraging smart mobile devices computational capabilities. In this context, this thesisproposal aims to contribute with an easy-to-implement  scheduling approach for running CPU-bound applications on a cluster of smart mobile devices. The approach is aware of the finite nature of smart mobile devices energy, and it does not depend on tasks information to operate. By contrast, it allocatescomputational resources to incoming tasks using a node ranking-based strategy. The ranking weights nodes combining static and dynamic parameters, including benchmark results, battery level, number of queued tasks, among others. This node ranking-based task assignment, or first allocation phase, is complemented with a re-balancing phase using job stealing techniques. The second allocation phase is an aid to the unbalanced load provoked as consequence of the non-dedicated nature of smart mobile devices CPU usage, i.e., the effect of the owner interaction, tasks heterogeneity, and lack of up-to-dateand accurate information of remaining energy estimations. The evaluation of the scheduling approach is through an in-vitro simulation. A novel simulator which exploits energy consumption profiles of real smart mobile devices, as well as, fluctuating CPU usage built upon empirical models, derived from real users interaction data, is another major contribution. Tests that validate the simulation tool are provided and the approach is evaluated in scenarios varying the composition of nodes, tasks and nodes characteristics including different tasks arrival rates, tasks requirements and different levels of nodes resource utilization.Fil: Hirsch Jofré, Matías Eberardo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tandil. Instituto Superior de Ingeniería del Software. Universidad Nacional del Centro de la Provincia de Buenos Aires. Instituto Superior de Ingeniería del Software; Argentin

The Semantic Grid: A future e-Science infrastructure

e-Science offers a promising vision of how computer and communication technology can support and enhance the scientific process. It does this by enabling scientists to generate, analyse, share and discuss their insights, experiments and results in an effective manner. The underlying computer infrastructure that provides these facilities is commonly referred to as the Grid. At this time, there are a number of grid applications being developed and there is a whole raft of computer technologies that provide fragments of the necessary functionality. However there is currently a major gap between these endeavours and the vision of e-Science in which there is a high degree of easy-to-use and seamless automation and in which there are flexible collaborations and computations on a global scale. To bridge this practice–aspiration divide, this paper presents a research agenda whose aim is to move from the current state of the art in e-Science infrastructure, to the future infrastructure that is needed to support the full richness of the e-Science vision. Here the future e-Science research infrastructure is termed the Semantic Grid (Semantic Grid to Grid is meant to connote a similar relationship to the one that exists between the Semantic Web and the Web). In particular, we present a conceptual architecture for the Semantic Grid. This architecture adopts a service-oriented perspective in which distinct stakeholders in the scientific process, represented as software agents, provide services to one another, under various service level agreements, in various forms of marketplace. We then focus predominantly on the issues concerned with the way that knowledge is acquired and used in such environments since we believe this is the key differentiator between current grid endeavours and those envisioned for the Semantic Grid