Exploiting Entity BIO Tag Embeddings and Multi-task Learning for Relation Extraction with Imbalanced Data

In practical scenario, relation extraction needs to first identify entity pairs that have relation and then assign a correct relation class. However, the number of non-relation entity pairs in context (negative instances) usually far exceeds the others (positive instances), which negatively affects a model's performance. To mitigate this problem, we propose a multi-task architecture which jointly trains a model to perform relation identification with cross-entropy loss and relation classification with ranking loss. Meanwhile, we observe that a sentence may have multiple entities and relation mentions, and the patterns in which the entities appear in a sentence may contain useful semantic information that can be utilized to distinguish between positive and negative instances. Thus we further incorporate the embeddings of character-wise/word-wise BIO tag from the named entity recognition task into character/word embeddings to enrich the input representation. Experiment results show that our proposed approach can significantly improve the performance of a baseline model with more than 10% absolute increase in F1-score, and outperform the state-of-the-art models on ACE 2005 Chinese and English corpus. Moreover, BIO tag embeddings are particularly effective and can be used to improve other models as well

Boosting Span-based Joint Entity and Relation Extraction via Squence Tagging Mechanism

Span-based joint extraction simultaneously conducts named entity recognition (NER) and relation extraction (RE) in text span form. Recent studies have shown that token labels can convey crucial task-specific information and enrich token semantics. However, as far as we know, due to completely abstain from sequence tagging mechanism, all prior span-based work fails to use token label in-formation. To solve this problem, we pro-pose Sequence Tagging enhanced Span-based Network (STSN), a span-based joint extrac-tion network that is enhanced by token BIO label information derived from sequence tag-ging based NER. By stacking multiple atten-tion layers in depth, we design a deep neu-ral architecture to build STSN, and each atten-tion layer consists of three basic attention units. The deep neural architecture first learns seman-tic representations for token labels and span-based joint extraction, and then constructs in-formation interactions between them, which also realizes bidirectional information interac-tions between span-based NER and RE. Fur-thermore, we extend the BIO tagging scheme to make STSN can extract overlapping en-tity. Experiments on three benchmark datasets show that our model consistently outperforms previous optimal models by a large margin, creating new state-of-the-art results.Comment: 10pages, 6 figures, 4 table

A two-stage deep learning approach for extracting entities and relationships from medical texts

This Work Presents A Two-Stage Deep Learning System For Named Entity Recognition (Ner) And Relation Extraction (Re) From Medical Texts. These Tasks Are A Crucial Step To Many Natural Language Understanding Applications In The Biomedical Domain. Automatic Medical Coding Of Electronic Medical Records, Automated Summarizing Of Patient Records, Automatic Cohort Identification For Clinical Studies, Text Simplification Of Health Documents For Patients, Early Detection Of Adverse Drug Reactions Or Automatic Identification Of Risk Factors Are Only A Few Examples Of The Many Possible Opportunities That The Text Analysis Can Offer In The Clinical Domain. In This Work, Our Efforts Are Primarily Directed Towards The Improvement Of The Pharmacovigilance Process By The Automatic Detection Of Drug-Drug Interactions (Ddi) From Texts. Moreover, We Deal With The Semantic Analysis Of Texts Containing Health Information For Patients. Our Two-Stage Approach Is Based On Deep Learning Architectures. Concretely, Ner Is Performed Combining A Bidirectional Long Short-Term Memory (Bi-Lstm) And A Conditional Random Field (Crf), While Re Applies A Convolutional Neural Network (Cnn). Since Our Approach Uses Very Few Language Resources, Only The Pre-Trained Word Embeddings, And Does Not Exploit Any Domain Resources (Such As Dictionaries Or Ontologies), This Can Be Easily Expandable To Support Other Languages And Clinical Applications That Require The Exploitation Of Semantic Information (Concepts And Relationships) From Texts...This work was supported by the Research Program of the Ministry of Economy and Competitiveness - Government of Spain, (DeepEMR project TIN2017-87548-C2-1-R)

An attentive neural architecture for joint segmentation and parsing and its application to real estate ads

In processing human produced text using natural language processing (NLP) techniques, two fundamental subtasks that arise are (i) segmentation of the plain text into meaningful subunits (e.g., entities), and (ii) dependency parsing, to establish relations between subunits. In this paper, we develop a relatively simple and effective neural joint model that performs both segmentation and dependency parsing together, instead of one after the other as in most state-of-the-art works. We will focus in particular on the real estate ad setting, aiming to convert an ad to a structured description, which we name property tree, comprising the tasks of (1) identifying important entities of a property (e.g., rooms) from classifieds and (2) structuring them into a tree format. In this work, we propose a new joint model that is able to tackle the two tasks simultaneously and construct the property tree by (i) avoiding the error propagation that would arise from the subtasks one after the other in a pipelined fashion, and (ii) exploiting the interactions between the subtasks. For this purpose, we perform an extensive comparative study of the pipeline methods and the new proposed joint model, reporting an improvement of over three percentage points in the overall edge F1 score of the property tree. Also, we propose attention methods, to encourage our model to focus on salient tokens during the construction of the property tree. Thus we experimentally demonstrate the usefulness of attentive neural architectures for the proposed joint model, showcasing a further improvement of two percentage points in edge F1 score for our application.Comment: Preprint - Accepted for publication in Expert Systems with Application

Site-Specific Rules Extraction in Precision Agriculture

El incremento sostenible en la producción alimentaria para satisfacer las necesidades de una población mundial en aumento es un verdadero reto cuando tenemos en cuenta el impacto constante de plagas y enfermedades en los cultivos. Debido a las importantes pérdidas económicas que se producen, el uso de tratamientos químicos es demasiado alto; causando contaminación del medio ambiente y resistencia a distintos tratamientos. En este contexto, la comunidad agrícola divisa la aplicación de tratamientos más específicos para cada lugar, así como la validación automática con la conformidad legal. Sin embargo, la especificación de estos tratamientos se encuentra en regulaciones expresadas en lenguaje natural. Por este motivo, traducir regulaciones a una representación procesable por máquinas está tomando cada vez más importancia en la agricultura de precisión.Actualmente, los requisitos para traducir las regulaciones en reglas formales están lejos de ser cumplidos; y con el rápido desarrollo de la ciencia agrícola, la verificación manual de la conformidad legal se torna inabordable.En esta tesis, el objetivo es construir y evaluar un sistema de extracción de reglas para destilar de manera efectiva la información relevante de las regulaciones y transformar las reglas de lenguaje natural a un formato estructurado que pueda ser procesado por máquinas. Para ello, hemos separado la extracción de reglas en dos pasos. El primero es construir una ontología del dominio; un modelo para describir los desórdenes que producen las enfermedades en los cultivos y sus tratamientos. El segundo paso es extraer información para poblar la ontología. Puesto que usamos técnicas de aprendizaje automático, implementamos la metodología MATTER para realizar el proceso de anotación de regulaciones. Una vez creado el corpus, construimos un clasificador de categorías de reglas que discierne entre obligaciones y prohibiciones; y un sistema para la extracción de restricciones en reglas, que reconoce información relevante para retener el isomorfismo con la regulación original. Para estos componentes, empleamos, entre otra técnicas de aprendizaje profundo, redes neuronales convolucionales y “Long Short- Term Memory”. Además, utilizamos como baselines algoritmos más tradicionales como “support-vector machines” y “random forests”.Como resultado, presentamos la ontología PCT-O, que ha sido alineada con otras ontologías como NCBI, PubChem, ChEBI y Wikipedia. El modelo puede ser utilizado para la identificación de desórdenes, el análisis de conflictos entre tratamientos y la comparación entre legislaciones de distintos países. Con respecto a los sistemas de extracción, evaluamos empíricamente el comportamiento con distintas métricas, pero la métrica F1 es utilizada para seleccionar los mejores sistemas. En el caso del clasificador de categorías de reglas, el mejor sistema obtiene un macro F1 de 92,77% y un F1 binario de 85,71%. Este sistema usa una red “bidirectional long short-term memory” con “word embeddings” como entrada. En relación al extractor de restricciones de reglas, el mejor sistema obtiene un micro F1 de 88,3%. Este extractor utiliza como entrada una combinación de “character embeddings” junto a “word embeddings” y una red neuronal “bidirectional long short-term memory”.<br /

Neural approaches to sequence labeling for information extraction

Een belangrijk aspect binnen artificiële intelligentie (AI) is het interpreteren van menselijke taal uitgedrukt in tekstuele (geschreven) vorm: natural Language processing (NLP) is belangrijk gezien tekstuele informatie nuttig is voor veel toepassingen. Toch is het verstaan ervan (zogenaamde natural Language understanding, (NLU) een uitdaging, gezien de ongestructureerde vorm van tekst, waarvan de betekenis vaak dubbelzinnig en contextafhankelijk is. In dit proefschrift introduceren we oplossingen voor tekortkomingen van gerelateerd werk bij het behandelen van fundamentele taken in natuurlijke taalverwerking, zoals named entity recognition (i.e. het identificeren van de entiteiten die in een zin voorkomen) en relatie-extractie (het identificeren van relaties tussen entiteiten). Vertrekkend van een specifiek probleem (met name het identificeren van de structuur van een huis aan de hand van een tekstueel zoekertje), bouwen we stapsgewijs een complete (geautomatiseerde) oplossing voor de bovengenoemde taken, op basis van neutrale netwerkarchitecturen. Onze oplossingen zijn algemeen toepasbaar op verschillende toepassingsdomeinen en talen. We beschouwen daarnaast ook de taak van het identificeren van relevante gebeurtenissen tijdens een evenement (bv. een doelpunt tijdens een voetbalwedstrijd), in informatiestromen op Twitter. Meer bepaald formuleren we dit probleem als het labelen van woord sequenties (vergelijkbaar met named entity recognition), waarbij we de chronologische relatie tussen opeenvolgende tweets benutten

Extracting Temporal and Causal Relations between Events

Structured information resulting from temporal information processing is crucial for a variety of natural language processing tasks, for instance to generate timeline summarization of events from news documents, or to answer temporal/causal-related questions about some events. In this thesis we present a framework for an integrated temporal and causal relation extraction system. We first develop a robust extraction component for each type of relations, i.e. temporal order and causality. We then combine the two extraction components into an integrated relation extraction system, CATENA---CAusal and Temporal relation Extraction from NAtural language texts---, by utilizing the presumption about event precedence in causality, that causing events must happened BEFORE resulting events. Several resources and techniques to improve our relation extraction systems are also discussed, including word embeddings and training data expansion. Finally, we report our adaptation efforts of temporal information processing for languages other than English, namely Italian and Indonesian.Comment: PhD Thesi