Automated Problem Decomposition for the Boolean Domain with Genetic Programming

Researchers have been interested in exploring the regularities and modularity of the problem space in genetic programming (GP) with the aim of decomposing the original problem into several smaller subproblems. The main motivation is to allow GP to deal with more complex problems. Most previous works on modularity in GP emphasise the structure of modules used to encapsulate code and/or promote code reuse, instead of in the decomposition of the original problem. In this paper we propose a problem decomposition strategy that allows the use of a GP search to find solutions for subproblems and combine the individual solutions into the complete solution to the problem

Relatedness Measures to Aid the Transfer of Building Blocks among Multiple Tasks

Multitask Learning is a learning paradigm that deals with multiple different tasks in parallel and transfers knowledge among them. XOF, a Learning Classifier System using tree-based programs to encode building blocks (meta-features), constructs and collects features with rich discriminative information for classification tasks in an observed list. This paper seeks to facilitate the automation of feature transferring in between tasks by utilising the observed list. We hypothesise that the best discriminative features of a classification task carry its characteristics. Therefore, the relatedness between any two tasks can be estimated by comparing their most appropriate patterns. We propose a multiple-XOF system, called mXOF, that can dynamically adapt feature transfer among XOFs. This system utilises the observed list to estimate the task relatedness. This method enables the automation of transferring features. In terms of knowledge discovery, the resemblance estimation provides insightful relations among multiple data. We experimented mXOF on various scenarios, e.g. representative Hierarchical Boolean problems, classification of distinct classes in the UCI Zoo dataset, and unrelated tasks, to validate its abilities of automatic knowledge-transfer and estimating task relatedness. Results show that mXOF can estimate the relatedness reasonably between multiple tasks to aid the learning performance with the dynamic feature transferring.Comment: accepted by The Genetic and Evolutionary Computation Conference (GECCO 2020

Disk Covering Methods Improve Phylogenomic Analyses

Motivation: With the rapid growth rate of newly sequenced genomes, species tree inference from multiple genes has become a basic bioinformatics task in comparative and evolutionary biology. However, accurate species tree estimation is difficult in the presence of gene tree discordance, which is often due to incomplete lineage sorting (ILS), modelled by the multi-species coalescent. Several highly accurate coalescent-based species tree estimation methods have been developed over the last decade, including MP-EST. However, the running time for MP-EST increases rapidly as the number of species grows. Results: We present divide-and-conquer techniques that improve the scalability of MP-EST so that it can run efficiently on large datasets. Surprisingly, this technique also improves the accuracy of species trees estimated by MP-EST, as our study shows on a collection of simulated and biological datasets.NSF DEB 0733029, DBI 1062335Computer Science

Update of an early warning fault detection method using artificial intelligence techniques

This presentation describes a research investigation to access the feasibility of using an Artificial Intelligence (AI) method to predict and detect faults at an early stage in power systems. An AI based detector has been developed to monitor and predict faults at an early stage on particular sections of power systems. The detector for this early warning fault detection device only requires external measurements taken from the input and output nodes of the power system. The AI detection system is capable of rapidly predicting a malfunction within the system. Artificial Neural Networks (ANNs) are being used as the core of the fault detector. In an earlier paper [11], a computer simulated medium length transmission line has been tested by the detector and the results clearly demonstrate the capability of the detector. Today’s presentation considers a case study illustrating the suitability of this AI Technique when applied to a distribution transformer. Furthermore, an evolutionary optimisation strategy to train ANNs is also briefly discussed in this presentation, together with a ‘crystal ball’ view of future developments in the operation and monitoring of transmission systems in the next millennium

Divide and Conquer Evolutionary TSP Solution for Vehicle Path Planning

The problem of robotic area coverage is applicable to many domains, such as search, agriculture, cleaning, and machine tooling. The robotic area coverage task is concerned with moving a vehicle with an effector, or sensor, through the task space such that the sensor passes over every point in the space. For covering complex areas, back and forth paths are inadequate. This paper presents a real-time path planning architecture consisting of layers of a clustering method to divide and conquer the problem combined with a two layered, global and local optimization method. This architecture is able to optimize the execution of a series of waypoints for a restricted mobility vehicle, a fixed wing airplane

Learning Multi-Tree Classification Models with Ant Colony Optimization

Ant Colony Optimization (ACO) is a meta-heuristic for solving combinatorial optimization problems, inspired by the behaviour of biological ant colonies. One of the successful applications of ACO is learning classification models (classifiers). A classifier encodes the relationships between the input attribute values and the values of a class attribute in a given set of labelled cases and it can be used to predict the class value of new unlabelled cases. Decision trees have been widely used as a type of classification model that represent comprehensible knowledge to the user. In this paper, we propose the use of ACO-based algorithms for learning an extended multi-tree classification model, which consists of multiple decision trees, one for each class value. Each class-based decision trees is responsible for discriminating between its class value and all other values available in the class domain. Our proposed algorithms are empirically evaluated against well-known decision trees induction algorithms, as well as the ACO-based Ant-Tree-Miner algorithm. The results show an overall improvement in predictive accuracy over 32 benchmark datasets. We also discuss how the new multi-tree models can provide the user with more understanding and knowledge-interpretability in a given domain

FreePSI: an alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome.

Alternative splicing plays an important role in many cellular processes of eukaryotic organisms. The exon-inclusion ratio, also known as percent spliced in, is often regarded as one of the most effective measures of alternative splicing events. The existing methods for estimating exon-inclusion ratios at the genome scale all require the existence of a reference transcriptome. In this paper, we propose an alignment-free method, FreePSI, to perform genome-wide estimation of exon-inclusion ratios from RNA-Seq data without relying on the guidance of a reference transcriptome. It uses a novel probabilistic generative model based on k-mer profiles to quantify the exon-inclusion ratios at the genome scale and an efficient expectation-maximization algorithm based on a divide-and-conquer strategy and ultrafast conjugate gradient projection descent method to solve the model. We compare FreePSI with the existing methods on simulated and real RNA-seq data in terms of both accuracy and efficiency and show that it is able to achieve very good performance even though a reference transcriptome is not provided. Our results suggest that FreePSI may have important applications in performing alternative splicing analysis for organisms that do not have quality reference transcriptomes. FreePSI is implemented in C++ and freely available to the public on GitHub