Squarepants in a Tree: Sum of Subtree Clustering and Hyperbolic Pants Decomposition

We provide efficient constant factor approximation algorithms for the problems of finding a hierarchical clustering of a point set in any metric space, minimizing the sum of minimimum spanning tree lengths within each cluster, and in the hyperbolic or Euclidean planes, minimizing the sum of cluster perimeters. Our algorithms for the hyperbolic and Euclidean planes can also be used to provide a pants decomposition, that is, a set of disjoint simple closed curves partitioning the plane minus the input points into subsets with exactly three boundary components, with approximately minimum total length. In the Euclidean case, these curves are squares; in the hyperbolic case, they combine our Euclidean square pants decomposition with our tree clustering method for general metric spaces.Comment: 22 pages, 14 figures. This version replaces the proof of what is now Lemma 5.2, as the previous proof was erroneou

New neighborhood search structures for the capacitated minimum spanning tree problem

Cover title. "November, 1998."Includes bibliographical references (p. 24-25).by Ravindra K. Ahuja, James B. Orlin, Dushyant Sharma

Scaling properties of protein family phylogenies

One of the classical questions in evolutionary biology is how evolutionary processes are coupled at the gene and species level. With this motivation, we compare the topological properties (mainly the depth scaling, as a characterization of balance) of a large set of protein phylogenies with a set of species phylogenies. The comparative analysis shows that both sets of phylogenies share remarkably similar scaling behavior, suggesting the universality of branching rules and of the evolutionary processes that drive biological diversification from gene to species level. In order to explain such generality, we propose a simple model which allows us to estimate the proportion of evolvability/robustness needed to approximate the scaling behavior observed in the phylogenies, highlighting the relevance of the robustness of a biological system (species or protein) in the scaling properties of the phylogenetic trees. Thus, the rules that govern the incapability of a biological system to diversify are equally relevant both at the gene and at the species level.Comment: Replaced with final published versio

Dynamic Spanning Trees for Connectivity Queries on Fully-dynamic Undirected Graphs (Extended version)

Answering connectivity queries is fundamental to fully dynamic graphs where edges and vertices are inserted and deleted frequently. Existing work proposes data structures and algorithms with worst-case guarantees. We propose a new data structure, the dynamic tree (D-tree), together with algorithms to construct and maintain it. The D-tree is the first data structure that scales to fully dynamic graphs with millions of vertices and edges and, on average, answers connectivity queries much faster than data structures with worst case guarantees

On Efficient Distributed Construction of Near Optimal Routing Schemes

Given a distributed network represented by a weighted undirected graph $G=(V,E)$ on $n$ vertices, and a parameter $k$, we devise a distributed algorithm that computes a routing scheme in $(n^{1/2+1/k}+D)\cdot n^{o(1)}$ rounds, where $D$ is the hop-diameter of the network. The running time matches the lower bound of $\tilde{\Omega}(n^{1/2}+D)$ rounds (which holds for any scheme with polynomial stretch), up to lower order terms. The routing tables are of size $\tilde{O}(n^{1/k})$, the labels are of size $O(k\log^2n)$, and every packet is routed on a path suffering stretch at most $4k-5+o(1)$. Our construction nearly matches the state-of-the-art for routing schemes built in a centralized sequential manner. The previous best algorithms for building routing tables in a distributed small messages model were by \cite[STOC 2013]{LP13} and \cite[PODC 2015]{LP15}. The former has similar properties but suffers from substantially larger routing tables of size $O(n^{1/2+1/k})$, while the latter has sub-optimal running time of $\tilde{O}(\min\{(nD)^{1/2}\cdot n^{1/k},n^{2/3+2/(3k)}+D\})$

Low Diameter Graph Decompositions by Approximate Distance Computation

In many models for large-scale computation, decomposition of the problem is key to efficient algorithms. For distance-related graph problems, it is often crucial that such a decomposition results in clusters of small diameter, while the probability that an edge is cut by the decomposition scales linearly with the length of the edge. There is a large body of literature on low diameter graph decomposition with small edge cutting probabilities, with all existing techniques heavily building on single source shortest paths (SSSP) computations. Unfortunately, in many theoretical models for large-scale computations, the SSSP task constitutes a complexity bottleneck. Therefore, it is desirable to replace exact SSSP computations with approximate ones. However this imposes a fundamental challenge since the existing constructions of low diameter graph decomposition with small edge cutting probabilities inherently rely on the subtractive form of the triangle inequality, which fails to hold under distance approximation. The current paper overcomes this obstacle by developing a technique termed blurry ball growing. By combining this technique with a clever algorithmic idea of Miller et al. (SPAA 2013), we obtain a construction of low diameter decompositions with small edge cutting probabilities which replaces exact SSSP computations by (a small number of) approximate ones. The utility of our approach is showcased by deriving efficient algorithms that work in the CONGEST, PRAM, and semi-streaming models of computation. As an application, we obtain metric tree embedding algorithms in the vein of Bartal (FOCS 1996) whose computational complexities in these models are optimal up to polylogarithmic factors. Our embeddings have the additional useful property that the tree can be mapped back to the original graph such that each edge is "used" only logaritmically many times, which is of interest for capacitated problems and simulating CONGEST algorithms on the tree into which the graph is embedded

Effective Edge-Fault-Tolerant Single-Source Spanners via Best (or Good) Swap Edges

Computing \emph{all best swap edges} (ABSE) of a spanning tree $T$ of a given $n$-vertex and $m$-edge undirected and weighted graph $G$ means to select, for each edge $e$ of $T$, a corresponding non-tree edge $f$, in such a way that the tree obtained by replacing $e$ with $f$ enjoys some optimality criterion (which is naturally defined according to some objective function originally addressed by $T$). Solving efficiently an ABSE problem is by now a classic algorithmic issue, since it conveys a very successful way of coping with a (transient) \emph{edge failure} in tree-based communication networks: just replace the failing edge with its respective swap edge, so as that the connectivity is promptly reestablished by minimizing the rerouting and set-up costs. In this paper, we solve the ABSE problem for the case in which $T$ is a \emph{single-source shortest-path tree} of $G$, and our two selected swap criteria aim to minimize either the \emph{maximum} or the \emph{average stretch} in the swap tree of all the paths emanating from the source. Having these criteria in mind, the obtained structures can then be reviewed as \emph{edge-fault-tolerant single-source spanners}. For them, we propose two efficient algorithms running in $O(m n +n^2 \log n)$ and $O(m n \log \alpha(m,n))$ time, respectively, and we show that the guaranteed (either maximum or average, respectively) stretch factor is equal to 3, and this is tight. Moreover, for the maximum stretch, we also propose an almost linear $O(m \log \alpha(m,n))$ time algorithm computing a set of \emph{good} swap edges, each of which will guarantee a relative approximation factor on the maximum stretch of $3/2$ (tight) as opposed to that provided by the corresponding BSE. Surprisingly, no previous results were known for these two very natural swap problems.Comment: 15 pages, 4 figures, SIROCCO 201