2,706 research outputs found
Exploiting citation networks for large-scale author name disambiguation
We present a novel algorithm and validation method for disambiguating author
names in very large bibliographic data sets and apply it to the full Web of
Science (WoS) citation index. Our algorithm relies only upon the author and
citation graphs available for the whole period covered by the WoS. A pair-wise
publication similarity metric, which is based on common co-authors,
self-citations, shared references and citations, is established to perform a
two-step agglomerative clustering that first connects individual papers and
then merges similar clusters. This parameterized model is optimized using an
h-index based recall measure, favoring the correct assignment of well-cited
publications, and a name-initials-based precision using WoS metadata and
cross-referenced Google Scholar profiles. Despite the use of limited metadata,
we reach a recall of 87% and a precision of 88% with a preference for
researchers with high h-index values. 47 million articles of WoS can be
disambiguated on a single machine in less than a day. We develop an h-index
distribution model, confirming that the prediction is in excellent agreement
with the empirical data, and yielding insight into the utility of the h-index
in real academic ranking scenarios.Comment: 14 pages, 5 figure
Named Entity Extraction and Disambiguation: The Reinforcement Effect.
Named entity extraction and disambiguation have received much attention in recent years. Typical fields addressing these topics are information retrieval, natural language processing, and semantic web. Although these topics are highly dependent, almost no existing works examine this dependency. It is the aim of this paper to examine the dependency and show how one affects the other, and vice versa. We conducted experiments with a set of descriptions of holiday homes with the aim to extract and disambiguate toponyms as a representative example of named entities. We experimented with three approaches for disambiguation with the purpose to infer the country of the holiday home. We examined how the effectiveness of extraction influences the effectiveness of disambiguation, and reciprocally, how filtering out ambiguous names (an activity that depends on the disambiguation process) improves the effectiveness of extraction. Since this, in turn, may improve the effectiveness of disambiguation again, it shows that extraction and disambiguation may reinforce each other.\u
Natural Language Query in the Biochemistry and Molecular Biology Domains Based on Cognition Search™
Motivation: With the tremendous growth in scientific literature, it is necessary to improve upon the standard pattern matching style of the available search engines. Semantic NLP may be the solution to this problem. Cognition Search (CSIR) is a natural language technology. It is best used by asking a simple question that might be answered in textual data being queried, such as MEDLINE. CSIR has a large English dictionary and semantic database. Cognition’s semantic map enables the search process to be based on meaning rather than statistical word pattern matching and, therefore, returns more complete and relevant results. The Cognition Search engine uses downward reasoning and synonymy which also improves recall. It improves precision through phrase parsing and word sense disambiguation.
Result: Here we have carried out several projects to "teach" the CSIR lexicon medical, biochemical and molecular biological language and acronyms from curated web-based free sources. Vocabulary from the Alliance for Cell Signaling (AfCS), the Human Genome Nomenclature Consortium (HGNC), the United Medical Language System (UMLS) Meta-thesaurus, and The International Union of Pure and Applied Chemistry (IUPAC) was introduced into the CSIR dictionary and curated. The resulting system was used to interpret MEDLINE abstracts. Meaning-based search of MEDLINE abstracts yields high precision (estimated at >90%), and high recall (estimated at >90%), where synonym information has been encoded. The present implementation can be found at http://MEDLINE.cognition.com. 

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