Diagnostically lossless coding of X-ray angiography images based on background suppression

X-ray angiography images are widely used to identify irregularities in the vascular system. Because of their high spatial resolution and the large amount of images generated daily, coding of X-ray angiography images is becoming essential. This paper proposes a diagnostically lossless coding method based on automatic segmentation of the focal area using ray-casting and α-shapes. The diagnostically relevant Region of Interest is first identified by exploiting the inherent symmetrical features of the image. The background is then suppressed and the resulting images are encoded using lossless and progressive lossy-to-lossless methods, including JPEG-LS, JPEG2000, H.264 and HEVC. Experiments on a large set of X-ray angiography images suggest that our method correctly identifies the Region of Interest. When compared to the case of coding with no background suppression, the method achieves average bit-stream reductions of nearly 34% and improvements on the reconstruction quality of up to 20 dB-SNR for progressive decoding

The quest for "diagnostically lossless" medical image compression using objective image quality measures

Given the explosive growth of digital image data being generated, medical communities worldwide have recognized the need for increasingly efficient methods of storage, display and transmission of medical images. For this reason lossy image compression is inevitable. Furthermore, it is absolutely essential to be able to determine the degree to which a medical image can be compressed before its “diagnostic quality” is compromised. This work aims to achieve “diagnostically lossless compression”, i.e., compression with no loss in visual quality nor diagnostic accuracy. Recent research by Koff et al. has shown that at higher compression levels lossy JPEG is more effective than JPEG2000 in some cases of brain and abdominal CT images. We have investigated the effects of the sharp skull edges in CT neuro images on JPEG and JPEG 2000 lossy compression. We provide an explanation why JPEG performs better than JPEG2000 for certain types of CT images. Another aspect of this study is primarily concerned with improved methods of assessing the diagnostic quality of compressed medical images. In this study, we have compared the performances of structural similarity (SSIM) index, mean squared error (MSE), compression ratio and JPEG quality factor, based on the data collected in a subjective experiment involving radiologists. An receiver operating characteristic (ROC) curve and Kolmogorov-Smirnov analyses indicate that compression ratio is not always a good indicator of visual quality. Moreover, SSIM demonstrates the best performance. We have also shown that a weighted Youden index can provide SSIM and MSE thresholds for acceptable compression. We have also proposed two approaches of modifying L2-based approximations so that they conform to Weber’s model of perception. We show that the imposition of a condition of perceptual invariance in greyscale space according to Weber’s model leads to the unique (unnormalized) measure with density function ρ(t) = 1/t. This result implies that the logarithmic L1 distance is the most natural “Weberized” image metric. We provide numerical implementations of the intensity-weighted approximation methods for natural and medical images

Efficient reconfigurable architectures for 3D medical image compression

This thesis was submitted for the degree of Doctor of Philosophy and awarded by Brunel University.Recently, the more widespread use of three-dimensional (3-D) imaging modalities, such as magnetic resonance imaging (MRI), computed tomography (CT), positron emission tomography (PET), and ultrasound (US) have generated a massive amount of volumetric data. These have provided an impetus to the development of other applications, in particular telemedicine and teleradiology. In these fields, medical image compression is important since both efficient storage and transmission of data through high-bandwidth digital communication lines are of crucial importance. Despite their advantages, most 3-D medical imaging algorithms are computationally intensive with matrix transformation as the most fundamental operation involved in the transform-based methods. Therefore, there is a real need for high-performance systems, whilst keeping architectures exible to allow for quick upgradeability with real-time applications. Moreover, in order to obtain efficient solutions for large medical volumes data, an efficient implementation of these operations is of significant importance. Reconfigurable hardware, in the form of field programmable gate arrays (FPGAs) has been proposed as viable system building block in the construction of high-performance systems at an economical price. Consequently, FPGAs seem an ideal candidate to harness and exploit their inherent advantages such as massive parallelism capabilities, multimillion gate counts, and special low-power packages. The key achievements of the work presented in this thesis are summarised as follows. Two architectures for 3-D Haar wavelet transform (HWT) have been proposed based on transpose-based computation and partial reconfiguration suitable for 3-D medical imaging applications. These applications require continuous hardware servicing, and as a result dynamic partial reconfiguration (DPR) has been introduced. Comparative study for both non-partial and partial reconfiguration implementation has shown that DPR offers many advantages and leads to a compelling solution for implementing computationally intensive applications such as 3-D medical image compression. Using DPR, several large systems are mapped to small hardware resources, and the area, power consumption as well as maximum frequency are optimised and improved. Moreover, an FPGA-based architecture of the finite Radon transform (FRAT)with three design strategies has been proposed: direct implementation of pseudo-code with a sequential or pipelined description, and block random access memory (BRAM)- based method. An analysis with various medical imaging modalities has been carried out. Results obtained for image de-noising implementation using FRAT exhibits promising results in reducing Gaussian white noise in medical images. In terms of hardware implementation, promising trade-offs on maximum frequency, throughput and area are also achieved. Furthermore, a novel hardware implementation of 3-D medical image compression system with context-based adaptive variable length coding (CAVLC) has been proposed. An evaluation of the 3-D integer transform (IT) and the discrete wavelet transform (DWT) with lifting scheme (LS) for transform blocks reveal that 3-D IT demonstrates better computational complexity than the 3-D DWT, whilst the 3-D DWT with LS exhibits a lossless compression that is significantly useful for medical image compression. Additionally, an architecture of CAVLC that is capable of compressing high-definition (HD) images in real-time without any buffer between the quantiser and the entropy coder is proposed. Through a judicious parallelisation, promising results have been obtained with limited resources. In summary, this research is tackling the issues of massive 3-D medical volumes data that requires compression as well as hardware implementation to accelerate the slowest operations in the system. Results obtained also reveal a significant achievement in terms of the architecture efficiency and applications performance.Ministry of Higher Education Malaysia (MOHE), Universiti Tun Hussein Onn Malaysia (UTHM) and the British Counci