On finitely recursive programs

Disjunctive finitary programs are a class of logic programs admitting function symbols and hence infinite domains. They have very good computational properties, for example ground queries are decidable while in the general case the stable model semantics is highly undecidable. In this paper we prove that a larger class of programs, called finitely recursive programs, preserves most of the good properties of finitary programs under the stable model semantics, namely: (i) finitely recursive programs enjoy a compactness property; (ii) inconsistency checking and skeptical reasoning are semidecidable; (iii) skeptical resolution is complete for normal finitely recursive programs. Moreover, we show how to check inconsistency and answer skeptical queries using finite subsets of the ground program instantiation. We achieve this by extending the splitting sequence theorem by Lifschitz and Turner: We prove that if the input program P is finitely recursive, then the partial stable models determined by any smooth splitting omega-sequence converge to a stable model of P.Comment: 26 pages, Preliminary version in Proc. of ICLP 2007, Best paper awar

Testing a deterministic implementation against a non-controllable non-deterministic stream X-machine

A stream X-machine is a type of extended finite state machine with an associated development approach that consists of building a system from a set of trusted components. One of the great benefits of using stream X-machines for the purpose of specification is the existence of test generation techniques that produce test suites that are guaranteed to determine correctness as long as certain well-defined conditions hold. One of the conditions that is traditionally assumed to hold is controllability: this insists that all paths through the stream X-machine are feasible. This restrictive condition has recently been weakened for testing from a deterministic stream X-machine. This paper shows how controllability can be replaced by a weaker condition when testing a deterministic system against a non-deterministic stream X-machine. This paper therefore develops a new, more general, test generation algorithm for testing from a non-deterministic stream X-machine

UIO sequence based checking sequences for distributed test architectures

This study addresses the construction of a preset checking sequence that will not pose controllability (synchronization) and observability (undetectable output shift) problems when applied in distributed test architectures that utilize remote testers. The controllability problem manifests itself when a tester is required to send the current input and because it did not send the previous input nor did it receive the previous output it cannot determine when to send the input. The observability problem manifests itself when a tester is expecting an output in response to either the previous input or the current input and because it is not the one to send the current input, it cannot determine when to start and stop waiting for the output. Based on UIO sequences, a checking sequence construction method is proposed to yield a sequence that is free from controllability and observability problems

Optimizing the length of checking sequences

A checking sequence, generated from a finite state machine, is a test sequence that is guaranteed to lead to a failure if the system under test is faulty and has no more states than the specification. The problem of generating a checking sequence for a finite state machine M is simplified if M has a distinguishing sequence: an input sequence D~ with the property that the output sequence produced by M in response to D is different for the different states of M. Previous work has shown that, where a distinguishing sequence is known, an efficient checking sequence can be produced from the elements of a set A of sequences that verify the distinguishing sequence used and the elements of a set /spl gamma/ of subsequences that test the individual transitions by following each transition t by the distinguishing sequence that verifies the final state of t. In this previous work, A is a predefined set and /spl gamma/ is defined in terms of A. The checking sequence is produced by connecting the elements of /spl gamma/ and A to form a single sequence, using a predefined acyclic set E/sub c/ of transitions. An optimization algorithm is used in order to produce the shortest such checking sequence that can be generated on the basis of the given A and E/sub c/. However, this previous work did not state how the sets A and E/sub c/ should be chosen. This paper investigates the problem of finding appropriate A and E/sub c/ to be used in checking sequence generation. We show how a set A may be chosen so that it minimizes the sum of the lengths of the sequences to be combined. Further, we show that the optimization step, in the checking sequence generation algorithm, may be adapted so that it generates the optimal E/sub c/. Experiments are used to evaluate the proposed method

A comparison of SNPs and microsatellites as linkage mapping markers: lessons from the zebra finch (Taeniopygia guttata)

Background: Genetic linkage maps are essential tools when searching for quantitative trait loci (QTL). To maximize genome coverage and provide an evenly spaced marker distribution a combination of different types of genetic marker are sometimes used. In this study we created linkage maps of four zebra finch (Taeniopygia guttata) chromosomes (1, 1A, 2 and 9) using two types of marker, Single Nucleotide Polymorphisms (SNPs) and microsatellites. To assess the effectiveness and accuracy of each kind of marker we compared maps built with each marker type separately and with both types of marker combined. Linkage map marker order was validated by making comparisons to the assembled zebra finch genome sequence. Results: We showed that marker order was less reliable and linkage map lengths were inflated for microsatellite maps relative to SNP maps, apparently due to differing error rates between the two types of marker. Guidelines on how to minimise the effects of error are provided. In particular, we show that when combining both types of marker the conventional process of building linkage maps, whereby the most informative markers are added to the map first, has to be modified in order to improve map accuracy. Conclusions: When using multiple types and large numbers of markers to create dense linkage maps, the least error prone loci (SNPs) rather than the most informative should be used to create framework maps before the addition of other potentially more error prone markers (microsatellites). This raises questions about the accuracy of marker order and predicted recombination rates in previous microsatellite linkage maps which were created using the conventional building process, however, provided suitable error detection strategies are followed microsatellite-based maps can continue to be regarded as reasonably reliable

Using formal methods to support testing

Formal methods and testing are two important approaches that assist in the development of high quality software. While traditionally these approaches have been seen as rivals, in recent years a new consensus has developed in which they are seen as complementary. This article reviews the state of the art regarding ways in which the presence of a formal specification can be used to assist testing

Computing Probabilistic Bisimilarity Distances for Probabilistic Automata

The probabilistic bisimilarity distance of Deng et al. has been proposed as a robust quantitative generalization of Segala and Lynch's probabilistic bisimilarity for probabilistic automata. In this paper, we present a characterization of the bisimilarity distance as the solution of a simple stochastic game. The characterization gives us an algorithm to compute the distances by applying Condon's simple policy iteration on these games. The correctness of Condon's approach, however, relies on the assumption that the games are stopping. Our games may be non-stopping in general, yet we are able to prove termination for this extended class of games. Already other algorithms have been proposed in the literature to compute these distances, with complexity in $\textbf{UP} \cap \textbf{coUP}$ and \textbf{PPAD}. Despite the theoretical relevance, these algorithms are inefficient in practice. To the best of our knowledge, our algorithm is the first practical solution. The characterization of the probabilistic bisimilarity distance mentioned above crucially uses a dual presentation of the Hausdorff distance due to M\'emoli. As an additional contribution, in this paper we show that M\'emoli's result can be used also to prove that the bisimilarity distance bounds the difference in the maximal (or minimal) probability of two states to satisfying arbitrary $\omega$-regular properties, expressed, eg., as LTL formulas