Survey and Analysis of Production Distributed Computing Infrastructures

This report has two objectives. First, we describe a set of the production distributed infrastructures currently available, so that the reader has a basic understanding of them. This includes explaining why each infrastructure was created and made available and how it has succeeded and failed. The set is not complete, but we believe it is representative. Second, we describe the infrastructures in terms of their use, which is a combination of how they were designed to be used and how users have found ways to use them. Applications are often designed and created with specific infrastructures in mind, with both an appreciation of the existing capabilities provided by those infrastructures and an anticipation of their future capabilities. Here, the infrastructures we discuss were often designed and created with specific applications in mind, or at least specific types of applications. The reader should understand how the interplay between the infrastructure providers and the users leads to such usages, which we call usage modalities. These usage modalities are really abstractions that exist between the infrastructures and the applications; they influence the infrastructures by representing the applications, and they influence the ap- plications by representing the infrastructures

A characterization of workflow management systems for extreme-scale applications

Automation of the execution of computational tasks is at the heart of improving scientific productivity. Over the last years, scientific workflows have been established as an important abstraction that captures data processing and computation of large and complex scientific applications. By allowing scientists to model and express entire data processing steps and their dependencies, workflow management systems relieve scientists from the details of an application and manage its execution on a computational infrastructure. As the resource requirements of today’s computational and data science applications that process vast amounts of data keep increasing, there is a compelling case for a new generation of advances in high-performance computing, commonly termed as extreme-scale computing, which will bring forth multiple challenges for the design of workflow applications and management systems. This paper presents a novel characterization of workflow management systems using features commonly associated with extreme-scale computing applications. We classify 15 popular workflow management systems in terms of workflow execution models, heterogeneous computing environments, and data access methods. The paper also surveys workflow applications and identifies gaps for future research on the road to extreme-scale workflows and management systems

The DeepHealth Toolkit: A key European free and open-source software for deep learning and computer vision ready to exploit heterogeneous HPC and cloud architectures

At the present time, we are immersed in the convergence between Big Data, High-Performance Computing and Artificial Intelligence. Technological progress in these three areas has accelerated in recent years, forcing different players like software companies and stakeholders to move quickly. The European Union is dedicating a lot of resources to maintain its relevant position in this scenario, funding projects to implement large-scale pilot testbeds that combine the latest advances in Artificial Intelligence, High-Performance Computing, Cloud and Big Data technologies. The DeepHealth project is an example focused on the health sector whose main outcome is the DeepHealth toolkit, a European unified framework that offers deep learning and computer vision capabilities, completely adapted to exploit underlying heterogeneous High-Performance Computing, Big Data and cloud architectures, and ready to be integrated into any software platform to facilitate the development and deployment of new applications for specific problems in any sector. This toolkit is intended to be one of the European contributions to the field of AI. This chapter introduces the toolkit with its main components and complementary tools, providing a clear view to facilitate and encourage its adoption and wide use by the European community of developers of AI-based solutions and data scientists working in the healthcare sector and others. iThis chapter describes work undertaken in the context of the DeepHealth project, “Deep-Learning and HPC to Boost Biomedical Applications for Health”, which has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 825111.Peer Reviewed"Article signat per 19 autors/es: Marco Aldinucci, David Atienza, Federico Bolelli, Mónica Caballero, Iacopo Colonnelli, José Flich, Jon A. Gómez, David González, Costantino Grana, Marco Grangetto, Simone Leo, Pedro López, Dana Oniga, Roberto Paredes, Luca Pireddu, Eduardo Quiñones, Tatiana Silva, Enzo Tartaglione & Marina Zapater "Postprint (author's final draft

Enabling dynamic and intelligent workflows for HPC, data analytics, and AI convergence

The evolution of High-Performance Computing (HPC) platforms enables the design and execution of progressively larger and more complex workflow applications in these systems. The complexity comes not only from the number of elements that compose the workflows but also from the type of computations they perform. While traditional HPC workflows target simulations and modelling of physical phenomena, current needs require in addition data analytics (DA) and artificial intelligence (AI) tasks. However, the development of these workflows is hampered by the lack of proper programming models and environments that support the integration of HPC, DA, and AI, as well as the lack of tools to easily deploy and execute the workflows in HPC systems. To progress in this direction, this paper presents use cases where complex workflows are required and investigates the main issues to be addressed for the HPC/DA/AI convergence. Based on this study, the paper identifies the challenges of a new workflow platform to manage complex workflows. Finally, it proposes a development approach for such a workflow platform addressing these challenges in two directions: first, by defining a software stack that provides the functionalities to manage these complex workflows; and second, by proposing the HPC Workflow as a Service (HPCWaaS) paradigm, which leverages the software stack to facilitate the reusability of complex workflows in federated HPC infrastructures. Proposals presented in this work are subject to study and development as part of the EuroHPC eFlows4HPC project.This work has received funding from the European High-Performance Computing Joint Undertaking (JU) under grant agreement No 955558. The JU receives support from the European Union’s Horizon 2020 research and innovation programme and Spain, Germany, France, Italy, Poland, Switzerland and Norway. In Spain, it has received complementary funding from MCIN/AEI/10.13039/501100011033, Spain and the European Union NextGenerationEU/PRTR (contracts PCI2021-121957, PCI2021-121931, PCI2021-121944, and PCI2021-121927). In Germany, it has received complementary funding from the German Federal Ministry of Education and Research (contracts 16HPC016K, 6GPC016K, 16HPC017 and 16HPC018). In France, it has received financial support from Caisse des dépôts et consignations (CDC) under the action PIA ADEIP (project Calculateurs). In Italy, it has been preliminary approved for complimentary funding by Ministero dello Sviluppo Economico (MiSE) (ref. project prop. 2659). In Norway, it has received complementary funding from the Norwegian Research Council, Norway under project number 323825. In Switzerland, it has been preliminary approved for complimentary funding by the State Secretariat for Education, Research, and Innovation (SERI), Norway. In Poland, it is partially supported by the National Centre for Research and Development under decision DWM/EuroHPCJU/4/2021. The authors also acknowledge financial support by MCIN/AEI /10.13039/501100011033, Spain through the “Severo Ochoa Programme for Centres of Excellence in R&D” under Grant CEX2018-000797-S, the Spanish Government, Spain (contract PID2019-107255 GB) and by Generalitat de Catalunya, Spain (contract 2017-SGR-01414). Anna Queralt is a Serra Húnter Fellow.With funding from the Spanish government through the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2018-000797-S)