71,049 research outputs found
Multi-Objective Big Data Optimization with jMetal and Spark
Big Data Optimization is the term used to refer to optimization problems which have to manage very large amounts of data. In this paper, we focus on the parallelization of metaheuristics with the Apache Spark cluster computing system for solving multi-objective Big Data Optimization problems. Our purpose is to study the influence of accessing data stored in the Hadoop File System (HDFS) in each evaluation step of a metaheuristic and to provide a software tool to solve these kinds of problems. This tool combines the jMetal multi-objective optimization framework with Apache Spark. We have carried out experiments to measure the performance of the proposed parallel infrastructure in an environment based on virtual machines in a local cluster comprising up to 100 cores. We obtained interesting results for computational e ort and propose guidelines to face multi-objective Big Data Optimization
problems.Universidad de Málaga. Campus de Excelencia Internacional Andalucía Tech
Architectural support for task dependence management with flexible software scheduling
The growing complexity of multi-core architectures has motivated a wide range of software mechanisms to improve the orchestration of parallel executions. Task parallelism has become a very attractive approach thanks to its programmability, portability and potential for optimizations. However, with the expected increase in core counts, finer-grained tasking will be required to exploit the available parallelism, which will increase the overheads introduced by the runtime system. This work presents Task Dependence Manager (TDM), a hardware/software co-designed mechanism to mitigate runtime system overheads. TDM introduces a hardware unit, denoted Dependence Management Unit (DMU), and minimal ISA extensions that allow the runtime system to offload costly dependence tracking operations to the DMU and to still perform task scheduling in software. With lower hardware cost, TDM outperforms hardware-based solutions and enhances the flexibility, adaptability and composability of the system. Results show that TDM improves performance by 12.3% and reduces EDP by 20.4% on average with respect to a software runtime system. Compared to a runtime system fully implemented in hardware, TDM achieves an average speedup of 4.2% with 7.3x less area requirements and significant EDP reductions. In addition, five different software schedulers are evaluated with TDM, illustrating its flexibility and performance gains.This work has been supported by the RoMoL ERC Advanced Grant (GA 321253), by the European HiPEAC Network of Excellence, by the Spanish Ministry of Science and
Innovation (contracts TIN2015-65316-P, TIN2016-76635-C2-2-R and TIN2016-81840-REDT), by the Generalitat de Catalunya (contracts 2014-SGR-1051 and 2014-SGR-1272), and by the European Union’s Horizon 2020 research and innovation programme under grant agreement No 671697 and No. 671610. M. Moretó has been partially supported by the Ministry of Economy and Competitiveness under Juan de la Cierva postdoctoral fellowship number JCI-2012-15047.Peer ReviewedPostprint (author's final draft
Recommended from our members
Preparing sparse solvers for exascale computing.
Sparse solvers provide essential functionality for a wide variety of scientific applications. Highly parallel sparse solvers are essential for continuing advances in high-fidelity, multi-physics and multi-scale simulations, especially as we target exascale platforms. This paper describes the challenges, strategies and progress of the US Department of Energy Exascale Computing project towards providing sparse solvers for exascale computing platforms. We address the demands of systems with thousands of high-performance node devices where exposing concurrency, hiding latency and creating alternative algorithms become essential. The efforts described here are works in progress, highlighting current success and upcoming challenges. This article is part of a discussion meeting issue 'Numerical algorithms for high-performance computational science'
Lock-free Concurrent Data Structures
Concurrent data structures are the data sharing side of parallel programming.
Data structures give the means to the program to store data, but also provide
operations to the program to access and manipulate these data. These operations
are implemented through algorithms that have to be efficient. In the sequential
setting, data structures are crucially important for the performance of the
respective computation. In the parallel programming setting, their importance
becomes more crucial because of the increased use of data and resource sharing
for utilizing parallelism.
The first and main goal of this chapter is to provide a sufficient background
and intuition to help the interested reader to navigate in the complex research
area of lock-free data structures. The second goal is to offer the programmer
familiarity to the subject that will allow her to use truly concurrent methods.Comment: To appear in "Programming Multi-core and Many-core Computing
Systems", eds. S. Pllana and F. Xhafa, Wiley Series on Parallel and
Distributed Computin
Automating Fault Tolerance in High-Performance Computational Biological Jobs Using Multi-Agent Approaches
Background: Large-scale biological jobs on high-performance computing systems
require manual intervention if one or more computing cores on which they
execute fail. This places not only a cost on the maintenance of the job, but
also a cost on the time taken for reinstating the job and the risk of losing
data and execution accomplished by the job before it failed. Approaches which
can proactively detect computing core failures and take action to relocate the
computing core's job onto reliable cores can make a significant step towards
automating fault tolerance.
Method: This paper describes an experimental investigation into the use of
multi-agent approaches for fault tolerance. Two approaches are studied, the
first at the job level and the second at the core level. The approaches are
investigated for single core failure scenarios that can occur in the execution
of parallel reduction algorithms on computer clusters. A third approach is
proposed that incorporates multi-agent technology both at the job and core
level. Experiments are pursued in the context of genome searching, a popular
computational biology application.
Result: The key conclusion is that the approaches proposed are feasible for
automating fault tolerance in high-performance computing systems with minimal
human intervention. In a typical experiment in which the fault tolerance is
studied, centralised and decentralised checkpointing approaches on an average
add 90% to the actual time for executing the job. On the other hand, in the
same experiment the multi-agent approaches add only 10% to the overall
execution time.Comment: Computers in Biology and Medicin
Probabilistic Graphical Models on Multi-Core CPUs using Java 8
In this paper, we discuss software design issues related to the development
of parallel computational intelligence algorithms on multi-core CPUs, using the
new Java 8 functional programming features. In particular, we focus on
probabilistic graphical models (PGMs) and present the parallelisation of a
collection of algorithms that deal with inference and learning of PGMs from
data. Namely, maximum likelihood estimation, importance sampling, and greedy
search for solving combinatorial optimisation problems. Through these concrete
examples, we tackle the problem of defining efficient data structures for PGMs
and parallel processing of same-size batches of data sets using Java 8
features. We also provide straightforward techniques to code parallel
algorithms that seamlessly exploit multi-core processors. The experimental
analysis, carried out using our open source AMIDST (Analysis of MassIve Data
STreams) Java toolbox, shows the merits of the proposed solutions.Comment: Pre-print version of the paper presented in the special issue on
Computational Intelligence Software at IEEE Computational Intelligence
Magazine journa
Using Graph Properties to Speed-up GPU-based Graph Traversal: A Model-driven Approach
While it is well-known and acknowledged that the performance of graph
algorithms is heavily dependent on the input data, there has been surprisingly
little research to quantify and predict the impact the graph structure has on
performance. Parallel graph algorithms, running on many-core systems such as
GPUs, are no exception: most research has focused on how to efficiently
implement and tune different graph operations on a specific GPU. However, the
performance impact of the input graph has only been taken into account
indirectly as a result of the graphs used to benchmark the system.
In this work, we present a case study investigating how to use the properties
of the input graph to improve the performance of the breadth-first search (BFS)
graph traversal. To do so, we first study the performance variation of 15
different BFS implementations across 248 graphs. Using this performance data,
we show that significant speed-up can be achieved by combining the best
implementation for each level of the traversal. To make use of this
data-dependent optimization, we must correctly predict the relative performance
of algorithms per graph level, and enable dynamic switching to the optimal
algorithm for each level at runtime.
We use the collected performance data to train a binary decision tree, to
enable high-accuracy predictions and fast switching. We demonstrate empirically
that our decision tree is both fast enough to allow dynamic switching between
implementations, without noticeable overhead, and accurate enough in its
prediction to enable significant BFS speedup. We conclude that our model-driven
approach (1) enables BFS to outperform state of the art GPU algorithms, and (2)
can be adapted for other BFS variants, other algorithms, or more specific
datasets
- …