On the role of pre and post-processing in environmental data mining

The quality of discovered knowledge is highly depending on data quality. Unfortunately real data use to contain noise, uncertainty, errors, redundancies or even irrelevant information. The more complex is the reality to be analyzed, the higher the risk of getting low quality data. Knowledge Discovery from Databases (KDD) offers a global framework to prepare data in the right form to perform correct analyses. On the other hand, the quality of decisions taken upon KDD results, depend not only on the quality of the results themselves, but on the capacity of the system to communicate those results in an understandable form. Environmental systems are particularly complex and environmental users particularly require clarity in their results. In this paper some details about how this can be achieved are provided. The role of the pre and post processing in the whole process of Knowledge Discovery in environmental systems is discussed

Predicting Pancreatic Cancer Using Support Vector Machine

This report presents an approach to predict pancreatic cancer using Support Vector Machine Classification algorithm. The research objective of this project it to predict pancreatic cancer on just genomic, just clinical and combination of genomic and clinical data. We have used real genomic data having 22,763 samples and 154 features per sample. We have also created Synthetic Clinical data having 400 samples and 7 features per sample in order to predict accuracy of just clinical data. To validate the hypothesis, we have combined synthetic clinical data with subset of features from real genomic data. In our results, we observed that prediction accuracy, precision, recall with just genomic data is 80.77%, 20%, 4%. Prediction accuracy, precision, recall with just synthetic clinical data is 93.33%, 95%, 30%. While prediction accuracy, precision, recall for combination of real genomic and synthetic clinical data is 90.83%, 10%, 5%. The combination of real genomic and synthetic clinical data decreased the accuracy since the genomic data is weakly correlated. Thus we conclude that the combination of genomic and clinical data does not improve pancreatic cancer prediction accuracy. A dataset with more significant genomic features might help to predict pancreatic cancer more accurately

Too Trivial To Test? An Inverse View on Defect Prediction to Identify Methods with Low Fault Risk

Background. Test resources are usually limited and therefore it is often not possible to completely test an application before a release. To cope with the problem of scarce resources, development teams can apply defect prediction to identify fault-prone code regions. However, defect prediction tends to low precision in cross-project prediction scenarios. Aims. We take an inverse view on defect prediction and aim to identify methods that can be deferred when testing because they contain hardly any faults due to their code being "trivial". We expect that characteristics of such methods might be project-independent, so that our approach could improve cross-project predictions. Method. We compute code metrics and apply association rule mining to create rules for identifying methods with low fault risk. We conduct an empirical study to assess our approach with six Java open-source projects containing precise fault data at the method level. Results. Our results show that inverse defect prediction can identify approx. 32-44% of the methods of a project to have a low fault risk; on average, they are about six times less likely to contain a fault than other methods. In cross-project predictions with larger, more diversified training sets, identified methods are even eleven times less likely to contain a fault. Conclusions. Inverse defect prediction supports the efficient allocation of test resources by identifying methods that can be treated with less priority in testing activities and is well applicable in cross-project prediction scenarios.Comment: Submitted to PeerJ C

A systematic review of data quality issues in knowledge discovery tasks

Hay un gran crecimiento en el volumen de datos porque las organizaciones capturan permanentemente la cantidad colectiva de datos para lograr un mejor proceso de toma de decisiones. El desafío mas fundamental es la exploración de los grandes volúmenes de datos y la extracción de conocimiento útil para futuras acciones por medio de tareas para el descubrimiento del conocimiento; sin embargo, muchos datos presentan mala calidad. Presentamos una revisión sistemática de los asuntos de calidad de datos en las áreas del descubrimiento de conocimiento y un estudio de caso aplicado a la enfermedad agrícola conocida como la roya del café.Large volume of data is growing because the organizations are continuously capturing the collective amount of data for better decision-making process. The most fundamental challenge is to explore the large volumes of data and extract useful knowledge for future actions through knowledge discovery tasks, nevertheless many data has poor quality. We presented a systematic review of the data quality issues in knowledge discovery tasks and a case study applied to agricultural disease named coffee rust

Cost-Sensitive Decision Tree with Multiple Resource Constraints

Resource constraints are commonly found in classification tasks. For example, there could be a budget limit on implementation and a deadline for finishing the classification task. Applying the top-down approach for tree induction in this situation may have significant drawbacks. In particular, it is difficult, especially in an early stage of tree induction, to assess an attribute’s contribution to improving the total implementation cost and its impact on attribute selection in later stages because of the deadline constraint. To address this problem, we propose an innovative algorithm, namely, the Cost-Sensitive Associative Tree (CAT) algorithm. Essentially, the algorithm first extracts and retains association classification rules from the training data which satisfy resource constraints, and then uses the rules to construct the final decision tree. The approach has advantages over the traditional top-down approach, first because only feasible classification rules are considered in the tree induction and, second, because their costs and resource use are known. In contrast, in the top-down approach, the information is not available for selecting splitting attributes. The experiment results show that the CAT algorithm significantly outperforms the top-down approach and adapts very well to available resources.Cost-sensitive learning, mining methods and algorithms, decision trees

Discovering patterns in a survey of secondary injuries due to agricultural assistive technology

The research is motivated by the need for hazard assessment in agriculture field. A small and highly-imbalanced dataset, in which negative instances heavily outnumber positive instances, is derived from a survey of secondary injuries induced by implementation of agriculture assistive technology which assists farmers with injuries or disabilities to continue farm-related work. Three data mining approaches are applied to the imbalanced dataset in order to discover patterns contributing to secondary injuries. All of patterns discovered by the three approaches are compared according to three evaluation measurements: support, confidence and lift, and potentially most interesting patterns are found. Compared to graphical exploratory analysis which figures out causative factors by evaluating the single effects of attributes on the occurrence of secondary injuries, decision tree algorithm and subgroup discovery algorithms are able to find combinational factors by evaluating the interactive effects of attributes on the occurrence of secondary injuries. Graphical exploratory analysis is able to find patterns with highest support and subgroup discovery algorithms are good at finding high lift patterns. In addition, the experimental analysis of applying subgroup discovery to our secondary injury dataset demonstrates subgroup discovery method\u27s capability of dealing with imbalanced datasets. Therefore, identifying risk factors contributing to secondary injuries, as well as providing a useful alternative method (subgroup discovery) of dealing with small and highly-imbalanced datasets are important outcomes of this thesis

Towards Automated Performance Bug Identification in Python

Context: Software performance is a critical non-functional requirement, appearing in many fields such as mission critical applications, financial, and real time systems. In this work we focused on early detection of performance bugs; our software under study was a real time system used in the advertisement/marketing domain. Goal: Find a simple and easy to implement solution, predicting performance bugs. Method: We built several models using four machine learning methods, commonly used for defect prediction: C4.5 Decision Trees, Na\"{\i}ve Bayes, Bayesian Networks, and Logistic Regression. Results: Our empirical results show that a C4.5 model, using lines of code changed, file's age and size as explanatory variables, can be used to predict performance bugs (recall=0.73, accuracy=0.85, and precision=0.96). We show that reducing the number of changes delivered on a commit, can decrease the chance of performance bug injection. Conclusions: We believe that our approach can help practitioners to eliminate performance bugs early in the development cycle. Our results are also of interest to theoreticians, establishing a link between functional bugs and (non-functional) performance bugs, and explicitly showing that attributes used for prediction of functional bugs can be used for prediction of performance bugs

Classification Using Association Rules

This research investigates the use of an unsupervised learning technique, association rules, to make class predictions. The use of association rules to make class predictions is a growing area of focus within data mining research. The research to date has focused predominately on balanced datasets or synthetized imbalanced datasets. There have been concerns raised that the algorithms using association rules to make classifications do not perform well on imbalanced datasets. This research comprehensively evaluates the accuracy of a number of association rule classifiers in predicting home loan sales in an Irish retail banking context. The experiments designed test three associative classifier algorithms CBA, CMAR and SPARCCC against two benchmark algorithms conditional inference trees and random forests on a naturally imbalanced dataset. The experiments implemented and evaluated show that the benchmark tree based algorithms conditional inference trees and random forests outperform the associative classifier models across a range of balanced accuracy measures. This research contributes to the growing body of research in extending association rules to make class prediction