THE CAVES Project - Collaborative Analysis Versioning Environment System; THE CODESH Project - Collaborative Development Shell

A key feature of collaboration in science and software development is to have a {\em log} of what and how is being done - for private use and reuse and for sharing selected parts with collaborators, which most often today are distributed geographically on an ever larger scale. Even better if this log is {\em automatic}, created on the fly while a scientist or software developer is working in a habitual way, without the need for extra efforts. The {\tt CAVES} and {\tt CODESH} projects address this problem in a novel way, building on the concepts of {\em virtual state} and {\em virtual transition} to provide an automatic persistent logbook for sessions of data analysis or software development in a collaborating group. A repository of sessions can be configured dynamically to record and make available the knowledge accumulated in the course of a scientific or software endeavor. Access can be controlled to define logbooks of private sessions and sessions shared within or between collaborating groups.Comment: 4 pages, presented at the Meeting of the Division of Particles and Fields of the APS, Riverside, USA, August 200

New Fault Detection, Mitigation and Injection Strategies for Current and Forthcoming Challenges of HW Embedded Designs

Tesis por compendio[EN] Relevance of electronics towards safety of common devices has only been growing, as an ever growing stake of the functionality is assigned to them. But of course, this comes along the constant need for higher performances to fulfill such functionality requirements, while keeping power and budget low. In this scenario, industry is struggling to provide a technology which meets all the performance, power and price specifications, at the cost of an increased vulnerability to several types of known faults or the appearance of new ones. To provide a solution for the new and growing faults in the systems, designers have been using traditional techniques from safety-critical applications, which offer in general suboptimal results. In fact, modern embedded architectures offer the possibility of optimizing the dependability properties by enabling the interaction of hardware, firmware and software levels in the process. However, that point is not yet successfully achieved. Advances in every level towards that direction are much needed if flexible, robust, resilient and cost effective fault tolerance is desired. The work presented here focuses on the hardware level, with the background consideration of a potential integration into a holistic approach. The efforts in this thesis have focused several issues: (i) to introduce additional fault models as required for adequate representativity of physical effects blooming in modern manufacturing technologies, (ii) to provide tools and methods to efficiently inject both the proposed models and classical ones, (iii) to analyze the optimum method for assessing the robustness of the systems by using extensive fault injection and later correlation with higher level layers in an effort to cut development time and cost, (iv) to provide new detection methodologies to cope with challenges modeled by proposed fault models, (v) to propose mitigation strategies focused towards tackling such new threat scenarios and (vi) to devise an automated methodology for the deployment of many fault tolerance mechanisms in a systematic robust way. The outcomes of the thesis constitute a suite of tools and methods to help the designer of critical systems in his task to develop robust, validated, and on-time designs tailored to his application.[ES] La relevancia que la electrónica adquiere en la seguridad de los productos ha crecido inexorablemente, puesto que cada vez ésta copa una mayor influencia en la funcionalidad de los mismos. Pero, por supuesto, este hecho viene acompañado de una necesidad constante de mayores prestaciones para cumplir con los requerimientos funcionales, al tiempo que se mantienen los costes y el consumo en unos niveles reducidos. En este escenario, la industria está realizando esfuerzos para proveer una tecnología que cumpla con todas las especificaciones de potencia, consumo y precio, a costa de un incremento en la vulnerabilidad a múltiples tipos de fallos conocidos o la introducción de nuevos. Para ofrecer una solución a los fallos nuevos y crecientes en los sistemas, los diseñadores han recurrido a técnicas tradicionalmente asociadas a sistemas críticos para la seguridad, que ofrecen en general resultados sub-óptimos. De hecho, las arquitecturas empotradas modernas ofrecen la posibilidad de optimizar las propiedades de confiabilidad al habilitar la interacción de los niveles de hardware, firmware y software en el proceso. No obstante, ese punto no está resulto todavía. Se necesitan avances en todos los niveles en la mencionada dirección para poder alcanzar los objetivos de una tolerancia a fallos flexible, robusta, resiliente y a bajo coste. El trabajo presentado aquí se centra en el nivel de hardware, con la consideración de fondo de una potencial integración en una estrategia holística. Los esfuerzos de esta tesis se han centrado en los siguientes aspectos: (i) la introducción de modelos de fallo adicionales requeridos para la representación adecuada de efectos físicos surgentes en las tecnologías de manufactura actuales, (ii) la provisión de herramientas y métodos para la inyección eficiente de los modelos propuestos y de los clásicos, (iii) el análisis del método óptimo para estudiar la robustez de sistemas mediante el uso de inyección de fallos extensiva, y la posterior correlación con capas de más alto nivel en un esfuerzo por recortar el tiempo y coste de desarrollo, (iv) la provisión de nuevos métodos de detección para cubrir los retos planteados por los modelos de fallo propuestos, (v) la propuesta de estrategias de mitigación enfocadas hacia el tratamiento de dichos escenarios de amenaza y (vi) la introducción de una metodología automatizada de despliegue de diversos mecanismos de tolerancia a fallos de forma robusta y sistemática. Los resultados de la presente tesis constituyen un conjunto de herramientas y métodos para ayudar al diseñador de sistemas críticos en su tarea de desarrollo de diseños robustos, validados y en tiempo adaptados a su aplicación.[CA] La rellevància que l'electrònica adquireix en la seguretat dels productes ha crescut inexorablement, puix cada volta més aquesta abasta una major influència en la funcionalitat dels mateixos. Però, per descomptat, aquest fet ve acompanyat d'un constant necessitat de majors prestacions per acomplir els requeriments funcionals, mentre es mantenen els costos i consums en uns nivells reduïts. Donat aquest escenari, la indústria està fent esforços per proveir una tecnologia que complisca amb totes les especificacions de potència, consum i preu, tot a costa d'un increment en la vulnerabilitat a diversos tipus de fallades conegudes, i a la introducció de nous tipus. Per oferir una solució a les noves i creixents fallades als sistemes, els dissenyadors han recorregut a tècniques tradicionalment associades a sistemes crítics per a la seguretat, que en general oferixen resultats sub-òptims. De fet, les arquitectures empotrades modernes oferixen la possibilitat d'optimitzar les propietats de confiabilitat en habilitar la interacció dels nivells de hardware, firmware i software en el procés. Tot i això eixe punt no està resolt encara. Es necessiten avanços a tots els nivells en l'esmentada direcció per poder assolir els objectius d'una tolerància a fallades flexible, robusta, resilient i a baix cost. El treball ací presentat se centra en el nivell de hardware, amb la consideració de fons d'una potencial integració en una estratègia holística. Els esforços d'esta tesi s'han centrat en els següents aspectes: (i) la introducció de models de fallada addicionals requerits per a la representació adequada d'efectes físics que apareixen en les tecnologies de fabricació actuals, (ii) la provisió de ferramentes i mètodes per a la injecció eficient del models proposats i dels clàssics, (iii) l'anàlisi del mètode òptim per estudiar la robustesa de sistemes mitjançant l'ús d'injecció de fallades extensiva, i la posterior correlació amb capes de més alt nivell en un esforç per retallar el temps i cost de desenvolupament, (iv) la provisió de nous mètodes de detecció per cobrir els reptes plantejats pels models de fallades proposats, (v) la proposta d'estratègies de mitigació enfocades cap al tractament dels esmentats escenaris d'amenaça i (vi) la introducció d'una metodologia automatitzada de desplegament de diversos mecanismes de tolerància a fallades de forma robusta i sistemàtica. Els resultats de la present tesi constitueixen un conjunt de ferramentes i mètodes per ajudar el dissenyador de sistemes crítics en la seua tasca de desenvolupament de dissenys robustos, validats i a temps adaptats a la seua aplicació.Espinosa García, J. (2016). New Fault Detection, Mitigation and Injection Strategies for Current and Forthcoming Challenges of HW Embedded Designs [Tesis doctoral no publicada]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/73146TESISCompendi

Temporal Network Analysis of Small Group Discourse

The analysis of school-age children engaged in engineering projects has proceeded by examining the conversations that take place among those children. The analysis of classroom discourse often considers a conversational turn to be the unit of analysis. In this study, small-group conversations among students engaged in a robotics project are analyzed by forming a dynamic network with the students as nodes and the utterances of each turn as edges. The data collected for this project contained more than 1000 turns for each group, with each group consisting of 4 students (and the occasional inclusion of a teacher or other interloper). The conversational turns were coded according to their content to form edges that vary qualitatively, with the content codes taken from prior literature on small group discourse during engineering design projects, resulting in approximately 10 possible codes for each edge. Analyzed as a time sequence of networks, clusters across turns were created that allow for a larger unit of analysis than is usually used. These larger units of analysis are more fruitfully connected to the stages of engineering design. Furthermore, the patterns uncovered allow for hypotheses to be made about the dynamics of transition between these stages, and also allow for these hypotheses to be compared to expert consideration of the group’s stage at various times. Although limited by noise and inter-group variation, the larger units allowed for greater insight into group processes during the engineering design cycle

Generalized Minimum Error with Fiducial Points Criterion for Robust Learning

The conventional Minimum Error Entropy criterion (MEE) has its limitations, showing reduced sensitivity to error mean values and uncertainty regarding error probability density function locations. To overcome this, a MEE with fiducial points criterion (MEEF), was presented. However, the efficacy of the MEEF is not consistent due to its reliance on a fixed Gaussian kernel. In this paper, a generalized minimum error with fiducial points criterion (GMEEF) is presented by adopting the Generalized Gaussian Density (GGD) function as kernel. The GGD extends the Gaussian distribution by introducing a shape parameter that provides more control over the tail behavior and peakedness. In addition, due to the high computational complexity of GMEEF criterion, the quantized idea is introduced to notably lower the computational load of the GMEEF-type algorithm. Finally, the proposed criterions are introduced to the domains of adaptive filter, kernel recursive algorithm, and multilayer perceptron. Several numerical simulations, which contain system identification, acoustic echo cancellation, times series prediction, and supervised classification, indicate that the novel algorithms' performance performs excellently.Comment: 12 pages, 9 figure

Automated clinical coding:What, why, and where we are?

Funding Information: The work is supported by WellCome Trust iTPA Awards (PIII009, PIII032), Health Data Research UK National Phenomics and Text Analytics Implementation Projects, and the United Kingdom Research and Innovation (grant EP/S02431X/1), UKRI Centre for Doctoral Training in Biomedical AI at the University of Edinburgh, School of Informatics. H.D. and J.C. are supported by the Engineering and Physical Sciences Research Council (EP/V050869/1) on “ConCur: Knowledge Base Construction and Curation”. HW was supported by Medical Research Council and Health Data Research UK (MR/S004149/1, MR/S004149/2); British Council (UCL-NMU-SEU international collaboration on Artificial Intelligence in Medicine: tackling challenges of low generalisability and health inequality); National Institute for Health Research (NIHR202639); Advanced Care Research Centre at the University of Edinburgh. We thank constructive comments from Murray Bell and Janice Watson in Terminology Service in Public Health Scotland, and information provided by Allison Reid in the coding department in NHS Lothian, Paul Mitchell, Nicola Symmers, and Barry Hewit in Edinburgh Cancer Informatics, and staff in Epic Systems Corporation. Thanks for the suggestions from Dr. Emma Davidson regarding clinical research. Thanks to the discussions with Dr. Kristiina Rannikmäe regarding the research on clinical coding and with Ruohua Han regarding the social and qualitative aspects of this research. In Fig. , the icon of “Clinical Coders” was from Freepik in Flaticon, https://www.flaticon.com/free-icon/user_747376 ; the icon of “Automated Coding System” was from Free Icon Library, https://icon-library.com/png/272370.html . Funding Information: The work is supported by WellCome Trust iTPA Awards (PIII009, PIII032), Health Data Research UK National Phenomics and Text Analytics Implementation Projects, and the United Kingdom Research and Innovation (grant EP/S02431X/1), UKRI Centre for Doctoral Training in Biomedical AI at the University of Edinburgh, School of Informatics. H.D. and J.C. are supported by the Engineering and Physical Sciences Research Council (EP/V050869/1) on “ConCur: Knowledge Base Construction and Curation”. HW was supported by Medical Research Council and Health Data Research UK (MR/S004149/1, MR/S004149/2); British Council (UCL-NMU-SEU international collaboration on Artificial Intelligence in Medicine: tackling challenges of low generalisability and health inequality); National Institute for Health Research (NIHR202639); Advanced Care Research Centre at the University of Edinburgh. We thank constructive comments from Murray Bell and Janice Watson in Terminology Service in Public Health Scotland, and information provided by Allison Reid in the coding department in NHS Lothian, Paul Mitchell, Nicola Symmers, and Barry Hewit in Edinburgh Cancer Informatics, and staff in Epic Systems Corporation. Thanks for the suggestions from Dr. Emma Davidson regarding clinical research. Thanks to the discussions with Dr. Kristiina Rannikmäe regarding the research on clinical coding and with Ruohua Han regarding the social and qualitative aspects of this research. In Fig. 1 , the icon of “Clinical Coders” was from Freepik in Flaticon, https://www.flaticon.com/free-icon/user_747376 ; the icon of “Automated Coding System” was from Free Icon Library, https://icon-library.com/png/272370.html. Publisher Copyright: © 2022, The Author(s).Clinical coding is the task of transforming medical information in a patient’s health records into structured codes so that they can be used for statistical analysis. This is a cognitive and time-consuming task that follows a standard process in order to achieve a high level of consistency. Clinical coding could potentially be supported by an automated system to improve the efficiency and accuracy of the process. We introduce the idea of automated clinical coding and summarise its challenges from the perspective of Artificial Intelligence (AI) and Natural Language Processing (NLP), based on the literature, our project experience over the past two and half years (late 2019–early 2022), and discussions with clinical coding experts in Scotland and the UK. Our research reveals the gaps between the current deep learning-based approach applied to clinical coding and the need for explainability and consistency in real-world practice. Knowledge-based methods that represent and reason the standard, explainable processof a task may need to be incorporated into deep learning-based methods for clinical coding. Automated clinical coding is a promising task for AI, despite the technical and organisational challenges. Coders are needed to be involved in the development process. There is much to achieve to develop and deploy an AI-based automated system to support coding in the next five years and beyond.Peer reviewe

Humanismus und Soziologie im Kontext der amerikanischen Säkularisierungskrise der 1980erjahre

Der amerikanische Humanismus des 20. Jahrhunderts führte die humanistische Denktradition in eigentümlicher Weise fort. Statt lediglich ›eine letzte Blüte des Idealismus und kosmischen Optimismus des 19. Jahrhunderts‹ zu sein, findet man in den Werken seiner Vertreter klassische humanistische Ideen auf eigentümliche Weise gewendet, verstärkt und umgeformt. Der amerikanische Humanismus erweist sich dabei als stark abhängig von nationalen Säkularisierungs- und Desäkularisierungsprozessen. Diese wiederum spiegeln sich auch in der zeitgenössischen soziologischen Forschung. Daher lohnt ein Vergleich humanistischer und soziologischer Bezugnahmen auf die amerikanische religiöse Entwicklung, um die Eigenarten beider deutlich zu machen. Besonders deutlich werden ihre Eigentümlichkeiten bei der Behandlung des Anfang der 1980er Jahre erstarkenden Fundamentalismus. Soziologie und Humanismus wandelten sich aufgrund einer Neubewertung der Religion im Zuge der Betrachtung der ›neofundamentalistischen Welle‹. Der Vergleich dieser Wandlungserscheinungen macht deutlich, dass Soziologie und Humanismus das Verhältnis der religiösen Wertsphäre zur Gesellschaft auf ähnliche Weise betrachten, jedoch mit dem Unterschied, dass die Soziologie nach wertfreier Beschreibung strebt, wo der Humanismus eine normative Stellungnahme abgibt

Discriminative Dictionary Learning With Spatial Constraints

In this thesis, we investigate the use of dictionary learning for discriminative tasks on natural images. Our contributions can be summarized as follows: • We introduce discriminative deviation based learning to achieve principled handling of the reconstruction-discrimination tradeoff that is inherent to discriminative dictionary learning. • Since natural images obey a strong smoothness prior, we show how spatial smoothness constraints can be incorporated into the learning formulation by embedding dictionary learning into Conditional Random Field (CRF) learning. We demonstrate that such smoothness constraints can lead to state-of-the-art performance for pixel-classification tasks. • Finally, we lay down the foundations of super-latent learning. By treating sparse codes on a CRF as latent variables, dictionary learning can also be performed via the Latent (Structural) SVM formulation for jointly learning a classifier over the sparse codes. The dictionary is treated as a super-latent variable that generates the latent variables