Eating your own dog food

As part of its project to develop a new research data management system the University of Lincoln is embracing development practices built around APIs - interfaces to the underlying data and functions of the system which are explicitly designed to make life easy for developers by being machine readable and programmatically accessible

The INCF Digital Atlasing Program: Report on Digital Atlasing Standards in the Rodent Brain

The goal of the INCF Digital Atlasing Program is to provide the vision and direction necessary to make the rapidly growing collection of multidimensional data of the rodent brain (images, gene expression, etc.) widely accessible and usable to the international research community. This Digital Brain Atlasing Standards Task Force was formed in May 2008 to investigate the state of rodent brain digital atlasing, and formulate standards, guidelines, and policy recommendations.

Our first objective has been the preparation of a detailed document that includes the vision and specific description of an infrastructure, systems and methods capable of serving the scientific goals of the community, as well as practical issues for achieving
the goals. This report builds on the 1st INCF Workshop on Mouse and Rat Brain Digital Atlasing Systems (Boline et al., 2007, _Nature Preceedings_, doi:10.1038/npre.2007.1046.1) and includes a more detailed analysis of both the current state and desired state of digital atlasing along with specific recommendations for achieving these goals

From Big Data to Big Displays: High-Performance Visualization at Blue Brain

Blue Brain has pushed high-performance visualization (HPV) to complement its HPC strategy since its inception in 2007. In 2011, this strategy has been accelerated to develop innovative visualization solutions through increased funding and strategic partnerships with other research institutions. We present the key elements of this HPV ecosystem, which integrates C++ visualization applications with novel collaborative display systems. We motivate how our strategy of transforming visualization engines into services enables a variety of use cases, not only for the integration with high-fidelity displays, but also to build service oriented architectures, to link into web applications and to provide remote services to Python applications.Comment: ISC 2017 Visualization at Scale worksho

The Scholarly Infrastructure Technical Summit @ eResearch Australasia 2011

Scholarly Infrastructure Technical Summit (SITS) meetings are designed to share technical operational experience between CTOs, Lead Developers and Head System Administrators so as to assure that internationally we are all DRY (Don't Repeat Yourself) i.e. saving technical operational money by learning from each other's previous experiences.Iteration four of the International Scholarly Infrastructure Technical Summit meeting following events in London and California and Geneva took place in Australia alongside the 2011 eResearch Conference (eXtreme eResearch).The eResearch conference brings together CTOs and CIOs from various Universities whose job it is to provide, work with and support IT services for scientific research projects. This was a first for SITS, which previously had seen a mix of researchers and those working on the fringes of institutional IT infrastructure. The Australian focus on supporting research directly thus provided the 4th new platform for the SITS meetings, one closest to the infrastructure itself

AndroShield:automated Android applications vulnerability detection, a hybrid static and dynamic analysis approach

The security of mobile applications has become a major research field which is associated with a lot of challenges. The high rate of developing mobile applications has resulted in less secure applications. This is due to what is called the “rush to release” as defined by Ponemon Institute. Security testing—which is considered one of the main phases of the development life cycle—is either not performed or given minimal time; hence, there is a need for security testing automation. One of the techniques used is Automated Vulnerability Detection. Vulnerability detection is one of the security tests that aims at pinpointing potential security leaks. Fixing those leaks results in protecting smart-phones and tablet mobile device users against attacks. This paper focuses on building a hybrid approach of static and dynamic analysis for detecting the vulnerabilities of Android applications. This approach is capsuled in a usable platform (web application) to make it easy to use for both public users and professional developers. Static analysis, on one hand, performs code analysis. It does not require running the application to detect vulnerabilities. Dynamic analysis, on the other hand, detects the vulnerabilities that are dependent on the run-time behaviour of the application and cannot be detected using static analysis. The model is evaluated against different applications with different security vulnerabilities. Compared with other detection platforms, our model detects information leaks as well as insecure network requests alongside other commonly detected flaws that harm users’ privacy. The code is available through a GitHub repository for public contribution

Designing and evaluating the usability of a machine learning API for rapid prototyping music technology

To better support creative software developers and music technologists' needs, and to empower them as machine learning users and innovators, the usability of and developer experience with machine learning tools must be considered and better understood. We review background research on the design and evaluation of application programming interfaces (APIs), with a focus on the domain of machine learning for music technology software development. We present the design rationale for the RAPID-MIX API, an easy-to-use API for rapid prototyping with interactive machine learning, and a usability evaluation study with software developers of music technology. A cognitive dimensions questionnaire was designed and delivered to a group of 12 participants who used the RAPID-MIX API in their software projects, including people who developed systems for personal use and professionals developing software products for music and creative technology companies. The results from the questionnaire indicate that participants found the RAPID-MIX API a machine learning API which is easy to learn and use, fun, and good for rapid prototyping with interactive machine learning. Based on these findings, we present an analysis and characterization of the RAPID-MIX API based on the cognitive dimensions framework, and discuss its design trade-offs and usability issues. We use these insights and our design experience to provide design recommendations for ML APIs for rapid prototyping of music technology. We conclude with a summary of the main insights, a discussion of the merits and challenges of the application of the CDs framework to the evaluation of machine learning APIs, and directions to future work which our research deems valuable

Web archives: the future

T his report is structured first, to engage in some speculative thought about the possible futures of the web as an exercise in prom pting us to think about what we need to do now in order to make sure that we can reliably and fruitfully use archives of the w eb in the future. Next, we turn to considering the methods and tools being used to research the live web, as a pointer to the types of things that can be developed to help unde rstand the archived web. Then , we turn to a series of topics and questions that researchers want or may want to address using the archived web. In this final section, we i dentify some of the challenges individuals, organizations, and international bodies can target to increase our ability to explore these topi cs and answer these quest ions. We end the report with some conclusions based on what we have learned from this exercise