Plant Virus Biodiversity and Ecology

The Plant Virus Biodiversity and Ecology (PVBE) project has been initiated to survey the biodiversity of viruses affecting vascular plants

1. Wochenbericht POS520

Investigating deep water column biodiversity and ecology of the Cape Verde Islands Weekly report 14/2/2018-21/2/201

Key ecological sites of Hamilton City: Volume 1

Ecological sites of significance previously identified in 2000 were reviewed in 2011. Natural vegetation in areas acquired by the city since 2000 was also surveyed to identify any new key sites. In total seventy key sites that met the Waikato Regional Council Regional Policy Statement criteria for ecological significance were identified across Hamilton City. Of the original key sites, the total area covered by sites, average site size and overall quality of sites had increased between the 2000 and 2011 surveys. This was due to restoration efforts across the city by Hamilton City Council and the community. Vegetation restoration efforts have had other biodiversity and ecological benefits such as providing additional habitat for the city’s increasing tui population. Key sites are not spread evenly across the city or across landform types. Most key sites are either in gullies or adjoining the Waikato River. Less than 1% of urban alluvial plains and peat bogs are key sites. Two sites on private land have degraded and no longer meet the ecological significance criteria in 2011. The current survey utilised a standard methodology focused on vegetation types. There will be other significant sites not identified including sites with significant fauna values but a detailed and costly survey would be required to identify all such sites. The 1.5% of the city area covered by key sites is well below the 10% minimum recommended to prevent biodiversity decline in urban areas. Areas where vegetation restoration has begun in the city have the potential to expand existing key sites or develop new sites if council and community efforts continue in the future. The Council and its restoration partners should continue to seek ways of increasing native vegetation cover in Hamilton City and restoration of the distinctive gully landform remains the best option

Wild record of an apple snail in the Waikato River, Hamilton, New Zealand and their incidence in freshwater aquaria

We report the discovery of a single specimen of a live apple snail Pomacea diffusa Blume 1957 (Ampullariidae: Prosobranchia), from the Waikato River, Hamilton city, central North Island, New Zealand. This species, along with the congeneric P. insularum, is imported for the aquarium trade, and its occurrence in the river likely stemmed from an aquarium release. A survey of 55 aquaria belonging to 43 hobbyists revealed 27 apple snails, with one owner having 22 snails. Assessment of environmental tolerances and impacts of P. diffusa, based largely on studies of the closely related and commonly confused congener P. bridgesii, suggests that direct habitat impacts by this species are likely to be minor. However, there could be indirect influences on native biodiversity through predation on eggs or competition for food supplies with other detritivorous species if densities were to become high. Water temperatures in the Waikato River below Hamilton (10-23˚C in 2009) may enable released individuals to persist for an extended period, and over summer may exceed the threshold required to enable breeding. However, population establishment would be most likely in locations where water is heated through geothermal influences or industrial cooling water discharges

Spot sampling of nutrient concentrations in the Puarenga catchment, Rotorua

The Centre for Biodiversity and Ecology Research was approached by Tūhourangi Tribal Authority for assistance with measuring water quality in streams in the Puarenga Stream catchment. Water sampling was subsequently undertaken on 18 July 2011 and samples were analysed to determine concentrations of total and dissolved fractions of nitrogen and phosphorus. Nitrogen and phosphorus are both essential plant nutrients which, when present in excess, can cause eutrophication and associated water quality decline of freshwaters. High concentrations of dissolved forms of nitrogen can also be toxic to aquatic organisms. Excessive nitrogen and phosphorus concentrations are typically the result of pollution due to human activities, although groundwater in the Central Volcanic Plateau region can have elevated concentrations of phosphorus arising from natural geological sources. This report summarises the methods used, presents the results and places measured concentrations in context by drawing comparisons with both guideline and regional mean values

Ecological restoration in Hamilton City, North Island, New Zealand

Hamilton City (New Zealand) has less than 20 hectares of high-quality, indigenous species dominated ecosystems, and only 1.6% of the original indigenous vegetation remains within the ecological district. A gradual recognition of the magnitude of landscape transformation has gathered momentum to the stage that there is now a concerted public and private effort to retrofit the City by restoring and reconstructing indigenous ecosystems. The initial focus was on rehabilitating existing key sites, but has shifted to restoring parts of the distinctive gully landform that occupies some 750 ha or 8% of the City. A new initiative at Waiwhakareke (Horseshoe Lake) will involve reconstruction from scratch of a range of ecosystems characteristic of the ecological district over an area of 60 ha. This address will examine a vision for ecological restoration in Hamilton City within the context of policy, education, and community dimensions that have triggered a shift from traditional parks and gardens management to ecosystem management

Boat electrofishing survey of common smelt and common bullies in the Ohau Channel

We conducted a boat electrofishing survey of the Ohau Channel, which flows from Lake Rotorua to Lake Rotoiti, on 13 December 2007. The purpose of the survey was to investigate the longitudinal pattern in densities of common smelt (Retropinna retropinna) and common bullies (Gobiomorphus cotidianus) along the Ohau Channel. We caught 1,267 fish comprising three native fish species and two introduced fish species in 1.58 km of fished distance at a total of 10 sites. Native species caught were the common smelt, common bully and longfinned eel (Anguilla dieffenbachii) and introduced species were rainbow trout (Oncorhynchus mykiss) and goldfish (Carassius auratus). Assuming that the bow-mounted anodes effectively fished a 4 m swath then the total area fished was 6,328 m2 (0.632 ha). Common smelt densities varied among the 10 different sites in the Ohau Channel ranging from 0 to 10.6 fish 100 m-2. Smelt density was higher at the upstream end of the channel near the weir at the Lake Rotorua outlet, decreasing with increasing distance from the weir. Smelt were found in the littoral zones but were not caught in mid-channel habitats. In the upstream reaches of the Ohau Channel, directly below the weir, a high number of juveniles (4.4 fish 100 m-2) were captured compared to the amount of juveniles captured at the other sites (0 – 1.2 fish 100 m-2). Common bully densities varied among the 10 different sites in the Ohau Channel ranging from 0.2 to 58.3 fish 100 m-2. No longitudinal pattern in the distribution of common bullies was evident along the channel. The highest densities were found halfway along the Ohau Channel where there was an abundance of dense macrophyte beds. Common bully densities were found to be much higher in the edge habitats with macrophyte beds compared to the mid-channel habitats and the willow edge habitat where there were relatively low densities. Size frequency data shows that there is generally a higher proportion of small bullies than larger ones suggesting that recruitment is occurring. Both adult and juvenile rainbow trout were observed in the Ohau Channel. Most of these individuals were found in the upstream section of the channel below the weir and ranged from a 75 mm juvenile to a fully grown adult about 500 mm long. Large longfinned eels were also captured and were only found in the downstream section of the Ohau Channel in willow-dominated edges. In the bottom third section of the channel, near the possible artificial embayment, goldfish were present

Bringing nature back into cities: urban land environments, indigenous cover and urban restoration

1. The restoration of urban ecosystems is an increasingly important strategy to maintain and enhance indigenous biodiversity as well as reconnecting people to the environment. High levels of endemism, the sensitivity of species that have evolved without humans, and the invasion of exotic species have all contributed to severe depletion of indigenous biodiversity in New Zealand. In this work, we analysed national patterns of urban biodiversity in New Zealand and the contribution that urban restoration can make to maximising and enhancing indigenous biodiversity. 2. We analysed data from two national databases in relation to the 20 largest New Zealand cities. We quantified existing indigenous biodiversity within cities, both within the core built up matrix and in centroid buffer zones of 5, 10 and 20 km around this urban centre. We analysed the type and frequency of land environments underlying cities as indicators of the range of native ecosystems that are (or can potentially be) represented within the broader environmental profile of New Zealand. We identified acutely threatened land environments that are represented within urban and periurban areas and the potential role of cities in enhancing biodiversity from these land environments. 3. New Zealand cities are highly variable in both landform and level of indigenous resource. Thirteen of 20 major land environments in New Zealand are represented in cities, and nearly three-quarters of all acutely threatened land environments are represented within 20 km of city cores nationally. Indigenous land cover is low within urban cores, with less than 2% on average remaining, and fragmentation is high. However, indigenous cover increases to more than 10% on average in the periurban zone, and the size of indigenous remnants also increases. The number of remaining indigenous landcover types also increases from only 5 types within the urban centre, to 14 types within 20 km of the inner urban cores. 4. In New Zealand, ecosystem restoration alone is not enough to prevent biodiversity loss from urban environments, with remnant indigenous cover in the urban core too small (and currently too degraded) to support biodiversity long-term. For some cities, indigenous cover in the periurban zone is also extremely low. This has significant ramifications for the threatened lowland and coastal environments that are most commonly represented in cities. Reconstruction of ecosystems is required to achieve a target of 10% indigenous cover in cities: the addition of land to land banks for this purpose is crucial. Future planning that protects indigenous remnants within the periurban zone is critical to the survival of many species within urban areas, mitigating the homogenisation and depletion of indigenous flora and fauna typical of urbanisation. A national urban biodiversity plan would help city councils address biodiversity issues beyond a local and regional focus, while encouraging predominantly local solutions to restoration challenges, based on the highly variable land environments, ecosystems and patch connectivity present within different urban areas

Indigenous vegetation types of Hamilton Ecological District

The following descriptions of indigenous vegetation types and lists of the most characteristic species have been compiled for the major landform units of the Hamilton Ecological District, which lies within the Waikato Ecological Region (McEwen 1987). The boundaries of the Hamilton Ecological District correspond approximately to those of the Hamilton basin, with the addition of parts of hills and foothills at the margins of the basin. The vegetation descriptions and species lists are based on knowledge of the flora of vegetation remnants in the ecological district, historical records (e.g., Gudex 1954), and extrapolation of data from other North Island sites with similar environmental profiles