26,280 research outputs found
Chemical communication between synthetic and natural cells: a possible experimental design
The bottom-up construction of synthetic cells is one of the most intriguing
and interesting research arenas in synthetic biology. Synthetic cells are built
by encapsulating biomolecules inside lipid vesicles (liposomes), allowing the
synthesis of one or more functional proteins. Thanks to the in situ synthesized
proteins, synthetic cells become able to perform several biomolecular
functions, which can be exploited for a large variety of applications. This
paves the way to several advanced uses of synthetic cells in basic science and
biotechnology, thanks to their versatility, modularity, biocompatibility, and
programmability. In the previous WIVACE (2012) we presented the
state-of-the-art of semi-synthetic minimal cell (SSMC) technology and
introduced, for the first time, the idea of chemical communication between
synthetic cells and natural cells. The development of a proper synthetic
communication protocol should be seen as a tool for the nascent field of
bio/chemical-based Information and Communication Technologies (bio-chem-ICTs)
and ultimately aimed at building soft-wet-micro-robots. In this contribution
(WIVACE, 2013) we present a blueprint for realizing this project, and show some
preliminary experimental results. We firstly discuss how our research goal
(based on the natural capabilities of biological systems to manipulate chemical
signals) finds a proper place in the current scientific and technological
contexts. Then, we shortly comment on the experimental approaches from the
viewpoints of (i) synthetic cell construction, and (ii) bioengineering of
microorganisms, providing up-to-date results from our laboratory. Finally, we
shortly discuss how autopoiesis can be used as a theoretical framework for
defining synthetic minimal life, minimal cognition, and as bridge between
synthetic biology and artificial intelligence.Comment: In Proceedings Wivace 2013, arXiv:1309.712
Modeling Life as Cognitive Info-Computation
This article presents a naturalist approach to cognition understood as a
network of info-computational, autopoietic processes in living systems. It
provides a conceptual framework for the unified view of cognition as evolved
from the simplest to the most complex organisms, based on new empirical and
theoretical results. It addresses three fundamental questions: what cognition
is, how cognition works and what cognition does at different levels of
complexity of living organisms. By explicating the info-computational character
of cognition, its evolution, agent-dependency and generative mechanisms we can
better understand its life-sustaining and life-propagating role. The
info-computational approach contributes to rethinking cognition as a process of
natural computation in living beings that can be applied for cognitive
computation in artificial systems.Comment: Manuscript submitted to Computability in Europe CiE 201
Synthetic biology: advancing biological frontiers by building synthetic systems
Advances in synthetic biology are contributing
to diverse research areas, from basic biology to
biomanufacturing and disease therapy. We discuss the
theoretical foundation, applications, and potential of
this emerging field
A population-based microbial oscillator
Genetic oscillators are a major theme of interest in the emerging field of
synthetic biology. Until recently, most work has been carried out using
intra-cellular oscillators, but this approach restricts the broader
applicability of such systems. Motivated by a desire to develop large-scale,
spatially-distributed cell-based computational systems, we present an initial
design for a population-level oscillator which uses three different bacterial
strains. Our system is based on the client-server model familiar to computer
science, and uses quorum sensing for communication between nodes. We present
the results of extensive in silico simulation tests, which confirm that our
design is both feasible and robust.Comment: Submitte
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