1,155 research outputs found
Peptide mass fingerprinting using field-programmable gate arrays
The reconfigurable computing paradigm, which exploits the flexibility and versatility of field-programmable gate arrays (FPGAs), has emerged as a powerful solution for speeding up time-critical algorithms. This paper describes a reconfigurable computing solution for processing raw mass spectrometric data generated by MALDI-TOF instruments. The hardware-implemented algorithms for denoising, baseline correction, peak identification, and deisotoping, running on a Xilinx Virtex-2 FPGA at 180 MHz, generate a mass fingerprint that is over 100 times faster than an equivalent algorithm written in C, running on a Dual 3-GHz Xeon server. The results obtained using the FPGA implementation are virtually identical to those generated by a commercial software package MassLynx
Identifying opportunities for dynamic circuit specialization
This work describes the identification of designs that benefit from a Dynamic Circuit Specialization (DCS) implementation on FPGAs. In DCS, the circuit is specialized for slowly changing inputs, called parameters. For certain applications or cores, a DCS implementation is faster and smaller than the original implementation. However, the best DCS implementation can be hard to identify, as it requires the designer to be familiar with both the design and DCS. In this paper, we present a profiling tool to aid the designer in analyzing the feasibility of a DCS implementation. It automatically provides a functional density estimate for the most interesting DCS implementations
A Scalable Correlator Architecture Based on Modular FPGA Hardware, Reuseable Gateware, and Data Packetization
A new generation of radio telescopes is achieving unprecedented levels of
sensitivity and resolution, as well as increased agility and field-of-view, by
employing high-performance digital signal processing hardware to phase and
correlate large numbers of antennas. The computational demands of these imaging
systems scale in proportion to BMN^2, where B is the signal bandwidth, M is the
number of independent beams, and N is the number of antennas. The
specifications of many new arrays lead to demands in excess of tens of PetaOps
per second.
To meet this challenge, we have developed a general purpose correlator
architecture using standard 10-Gbit Ethernet switches to pass data between
flexible hardware modules containing Field Programmable Gate Array (FPGA)
chips. These chips are programmed using open-source signal processing libraries
we have developed to be flexible, scalable, and chip-independent. This work
reduces the time and cost of implementing a wide range of signal processing
systems, with correlators foremost among them,and facilitates upgrading to new
generations of processing technology. We present several correlator
deployments, including a 16-antenna, 200-MHz bandwidth, 4-bit, full Stokes
parameter application deployed on the Precision Array for Probing the Epoch of
Reionization.Comment: Accepted to Publications of the Astronomy Society of the Pacific. 31
pages. v2: corrected typo, v3: corrected Fig. 1
Object-oriented domain specific compilers for programming FPGAs
Published versio
- …