1,029 research outputs found
Wavelet based segmentation of hyperspectral colon tissue imagery
Segmentation is an early stage for the automated classification of tissue cells between normal and malignant types. We present an algorithm for unsupervised segmentation of images of hyperspectral human colon tissue cells into their constituent parts by exploiting the spatial relationship between these constituent parts. This is done by employing a modification of the conventional wavelet based texture analysis, on the projection of hyperspectral image data in the first principal component direction. Results show that our algorithm is comparable to other more computationally intensive methods which exploit the spectral characteristics of the hyperspectral imagery data
Deep learning in remote sensing: a review
Standing at the paradigm shift towards data-intensive science, machine
learning techniques are becoming increasingly important. In particular, as a
major breakthrough in the field, deep learning has proven as an extremely
powerful tool in many fields. Shall we embrace deep learning as the key to all?
Or, should we resist a 'black-box' solution? There are controversial opinions
in the remote sensing community. In this article, we analyze the challenges of
using deep learning for remote sensing data analysis, review the recent
advances, and provide resources to make deep learning in remote sensing
ridiculously simple to start with. More importantly, we advocate remote sensing
scientists to bring their expertise into deep learning, and use it as an
implicit general model to tackle unprecedented large-scale influential
challenges, such as climate change and urbanization.Comment: Accepted for publication IEEE Geoscience and Remote Sensing Magazin
Aerial Vehicle Tracking by Adaptive Fusion of Hyperspectral Likelihood Maps
Hyperspectral cameras can provide unique spectral signatures for consistently
distinguishing materials that can be used to solve surveillance tasks. In this
paper, we propose a novel real-time hyperspectral likelihood maps-aided
tracking method (HLT) inspired by an adaptive hyperspectral sensor. A moving
object tracking system generally consists of registration, object detection,
and tracking modules. We focus on the target detection part and remove the
necessity to build any offline classifiers and tune a large amount of
hyperparameters, instead learning a generative target model in an online manner
for hyperspectral channels ranging from visible to infrared wavelengths. The
key idea is that, our adaptive fusion method can combine likelihood maps from
multiple bands of hyperspectral imagery into one single more distinctive
representation increasing the margin between mean value of foreground and
background pixels in the fused map. Experimental results show that the HLT not
only outperforms all established fusion methods but is on par with the current
state-of-the-art hyperspectral target tracking frameworks.Comment: Accepted at the International Conference on Computer Vision and
Pattern Recognition Workshops, 201
Mineral identification using data-mining in hyperspectral infrared imagery
Les applications de lâimagerie infrarouge dans le domaine de la gĂ©ologie sont principalement des applications hyperspectrales. Elles permettent entre autre lâidentification minĂ©rale, la cartographie, ainsi que lâestimation de la portĂ©e. Le plus souvent, ces acquisitions sont rĂ©alisĂ©es in-situ soit Ă lâaide de capteurs aĂ©roportĂ©s, soit Ă lâaide de dispositifs portatifs. La dĂ©couverte de minĂ©raux indicateurs a permis dâamĂ©liorer grandement lâexploration minĂ©rale. Ceci est en partie dĂ» Ă lâutilisation dâinstruments portatifs. Dans ce contexte le dĂ©veloppement de systĂšmes automatisĂ©s permettrait dâaugmenter Ă la fois la qualitĂ© de lâexploration et la prĂ©cision de la dĂ©tection des indicateurs. Câest dans ce cadre que sâinscrit le travail menĂ© dans ce doctorat. Le sujet consistait en lâutilisation de mĂ©thodes dâapprentissage automatique appliquĂ©es Ă lâanalyse (au traitement) dâimages hyperspectrales prises dans les longueurs dâonde infrarouge. Lâobjectif recherchĂ© Ă©tant lâidentification de grains minĂ©raux de petites tailles utilisĂ©s comme indicateurs minĂ©ral -ogiques. Une application potentielle de cette recherche serait le dĂ©veloppement dâun outil logiciel dâassistance pour lâanalyse des Ă©chantillons lors de lâexploration minĂ©rale. Les expĂ©riences ont Ă©tĂ© menĂ©es en laboratoire dans la gamme relative Ă lâinfrarouge thermique (Long Wave InfraRed, LWIR) de 7.7m Ă 11.8 m. Ces essais ont permis de proposer une mĂ©thode pour calculer lâannulation du continuum. La mĂ©thode utilisĂ©e lors de ces essais utilise la factorisation matricielle non nĂ©gative (NMF). En utlisant une factorisation du premier ordre on peut dĂ©duire le rayonnement de pĂ©nĂ©tration, lequel peut ensuite ĂȘtre comparĂ© et analysĂ© par rapport Ă dâautres mĂ©thodes plus communes. Lâanalyse des rĂ©sultats spectraux en comparaison avec plusieurs bibliothĂšques existantes de donnĂ©es a permis de mettre en Ă©vidence la suppression du continuum. Les expĂ©rience ayant menĂ©s Ă ce rĂ©sultat ont Ă©tĂ© conduites en utilisant une plaque Infragold ainsi quâun objectif macro LWIR. Lâidentification automatique de grains de diffĂ©rents matĂ©riaux tels que la pyrope, lâolivine et le quartz a commencĂ©. Lors dâune phase de comparaison entre des approches supervisĂ©es et non supervisĂ©es, cette derniĂšre sâest montrĂ©e plus appropriĂ© en raison du comportement indĂ©pendant par rapport Ă lâĂ©tape dâentraĂźnement. Afin de confirmer la qualitĂ© de ces rĂ©sultats quatre expĂ©riences ont Ă©tĂ© menĂ©es. Lors dâune premiĂšre expĂ©rience deux algorithmes ont Ă©tĂ© Ă©valuĂ©s pour application de regroupements en utilisant lâapproche FCC (False Colour Composite). Cet essai a permis dâobserver une vitesse de convergence, jusquâa vingt fois plus rapide, ainsi quâune efficacitĂ© significativement accrue concernant lâidentification en comparaison des rĂ©sultats de la littĂ©rature. Cependant des essais effectuĂ©s sur des donnĂ©es LWIR ont montrĂ© un manque de prĂ©diction de la surface du grain lorsque les grains Ă©taient irrĂ©guliers avec prĂ©sence dâagrĂ©gats minĂ©raux. La seconde expĂ©rience a consistĂ©, en une analyse quantitaive comparative entre deux bases de donnĂ©es de Ground Truth (GT), nommĂ©e rigid-GT et observed-GT (rigide-GT: Ă©tiquet manuel de la rĂ©gion, observĂ©e-GT:Ă©tiquetage manuel les pixels). La prĂ©cision des rĂ©sultats Ă©tait 1.5 fois meilleur lorsque lâon a utlisĂ© la base de donnĂ©es observed-GT que rigid-GT. Pour les deux derniĂšres epxĂ©rience, des donnĂ©es venant dâun MEB (Microscope Ălectronique Ă Balayage) ainsi que dâun microscopie Ă fluorescence (XRF) ont Ă©tĂ© ajoutĂ©es. Ces donnĂ©es ont permis dâintroduire des informations relatives tant aux agrĂ©gats minĂ©raux quâĂ la surface des grains. Les rĂ©sultats ont Ă©tĂ© comparĂ©s par des techniques dâidentification automatique des minĂ©raux, utilisant ArcGIS. Cette derniĂšre a montrĂ© une performance prometteuse quand Ă lâidentification automatique et Ă aussi Ă©tĂ© utilisĂ©e pour la GT de validation. Dans lâensemble, les quatre mĂ©thodes de cette thĂšse reprĂ©sentent des mĂ©thodologies bĂ©nĂ©fiques pour lâidentification des minĂ©raux. Ces mĂ©thodes prĂ©sentent lâavantage dâĂȘtre non-destructives, relativement prĂ©cises et dâavoir un faible coĂ»t en temps calcul ce qui pourrait les qualifier pour ĂȘtre utilisĂ©e dans des conditions de laboratoire ou sur le terrain.The geological applications of hyperspectral infrared imagery mainly consist in mineral identification, mapping, airborne or portable instruments, and core logging. Finding the mineral indicators offer considerable benefits in terms of mineralogy and mineral exploration which usually involves application of portable instrument and core logging. Moreover, faster and more mechanized systems development increases the precision of identifying mineral indicators and avoid any possible mis-classification. Therefore, the objective of this thesis was to create a tool to using hyperspectral infrared imagery and process the data through image analysis and machine learning methods to identify small size mineral grains used as mineral indicators. This system would be applied for different circumstances to provide an assistant for geological analysis and mineralogy exploration. The experiments were conducted in laboratory conditions in the long-wave infrared (7.7ÎŒm to 11.8ÎŒm - LWIR), with a LWIR-macro lens (to improve spatial resolution), an Infragold plate, and a heating source. The process began with a method to calculate the continuum removal. The approach is the application of Non-negative Matrix Factorization (NMF) to extract Rank-1 NMF and estimate the down-welling radiance and then compare it with other conventional methods. The results indicate successful suppression of the continuum from the spectra and enable the spectra to be compared with spectral libraries. Afterwards, to have an automated system, supervised and unsupervised approaches have been tested for identification of pyrope, olivine and quartz grains. The results indicated that the unsupervised approach was more suitable due to independent behavior against training stage. Once these results obtained, two algorithms were tested to create False Color Composites (FCC) applying a clustering approach. The results of this comparison indicate significant computational efficiency (more than 20 times faster) and promising performance for mineral identification. Finally, the reliability of the automated LWIR hyperspectral infrared mineral identification has been tested and the difficulty for identification of the irregular grainâs surface along with the mineral aggregates has been verified. The results were compared to two different Ground Truth(GT) (i.e. rigid-GT and observed-GT) for quantitative calculation. Observed-GT increased the accuracy up to 1.5 times than rigid-GT. The samples were also examined by Micro X-ray Fluorescence (XRF) and Scanning Electron Microscope (SEM) in order to retrieve information for the mineral aggregates and the grainâs surface (biotite, epidote, goethite, diopside, smithsonite, tourmaline, kyanite, scheelite, pyrope, olivine, and quartz). The results of XRF imagery compared with automatic mineral identification techniques, using ArcGIS, and represented a promising performance for automatic identification and have been used for GT validation. In overall, the four methods (i.e. 1.Continuum removal methods; 2. Classification or clustering methods for mineral identification; 3. Two algorithms for clustering of mineral spectra; 4. Reliability verification) in this thesis represent beneficial methodologies to identify minerals. These methods have the advantages to be a non-destructive, relatively accurate and have low computational complexity that might be used to identify and assess mineral grains in the laboratory conditions or in the field
Abstracting GIS Layers from Hyperspectral Imagery
Modern warfare methods in the urban environment necessitates the use of multiple layers of sensors to manage the battle space. Hyperspectral imagers are one possible sensor modality to provide remotely sensed images that can be converted into Geographic Information Systems (GIS) layers. GIS layers abstract knowledge of roads, buildings, and scene content and contain shape files that outline and highlight scene features. Creating shape files is a labor-intensive and time-consuming process. The availability of shape files that reflect the current configuration of an area of interest significantly enhances Intelligence Preparation of the Battlespace (IPB). The solution presented in this thesis is a novel process to automate the creation of shape files by exploiting the spectral-spatial relationship of a hyperspectral image cube. It is assumed that âa-prioriâ endmember spectra, a spectral database, or specific scene knowledge is not available. The topological neighborhood of a Self Organizing Map (SOM) is segmented and used as a spectral filter to produce six initial object maps that are spatially processed with logical and morphological operations. A novel road finding algorithm connects road segments under significantly tree-occluded roadways into a contiguous road network. The manual abstraction of GIS shape files is improved into a semi-automated process. The resulting shape files are not susceptible to deviation from orthorectified imagery as they are produced directly from the hyperspectral imagery. The results are eight separate high-quality GIS layers (Vegetation, Non-Tree Vegetation, Trees, Fields, Buildings, Major Buildings, Roadways, and Parking Areas) that follow the terrain of the hyperspectral image and are separately and automatically labeled. Spatial processing improves layer accuracy from 85% to 94%. Significant layer accuracies include the âroad networkâ at 93%, âbuildingsâ at 97%, and âmajor buildingsâ at 98%
A Trillion Coral Reef Colors: Deeply Annotated Underwater Hyperspectral Images for Automated Classification and Habitat Mapping
This paper describes a large dataset of underwater hyperspectral imagery that can be used by researchers in the domains of computer vision, machine learning, remote sensing, and coral reef ecology. We present the details of underwater data acquisition, processing and curation to create this large dataset of coral reef imagery annotated for habitat mapping. A diver-operated hyperspectral imaging system (HyperDiver) was used to survey 147 transects at 8 coral reef sites around the Caribbean island of Curacao. The underwater proximal sensing approach produced fine-scale images of the seafloor, with more than 2.2 billion points of detailed optical spectra. Of these, more than 10 million data points have been annotated for habitat descriptors or taxonomic identity with a total of 47 class labels up to genus- and species-levels. In addition to HyperDiver survey data, we also include images and annotations from traditional (color photo) quadrat surveys conducted along 23 of the 147 transects, which enables comparative reef description between two types of reef survey methods. This dataset promises benefits for efforts in classification algorithms, hyperspectral image segmentation and automated habitat mapping. Dataset: https://doi.org/10.1594/PANGAEA.911300 Dataset License: CC-BY-N
Histopathological image analysis : a review
Over the past decade, dramatic increases in computational power and improvement in image analysis algorithms have allowed the development of powerful computer-assisted analytical approaches to radiological data. With the recent advent of whole slide digital scanners, tissue histopathology slides can now be digitized and stored in digital image form. Consequently, digitized tissue histopathology has now become amenable to the application of computerized image analysis and machine learning techniques. Analogous to the role of computer-assisted diagnosis (CAD) algorithms in medical imaging to complement the opinion of a radiologist, CAD algorithms have begun to be developed for disease detection, diagnosis, and prognosis prediction to complement the opinion of the pathologist. In this paper, we review the recent state of the art CAD technology for digitized histopathology. This paper also briefly describes the development and application of novel image analysis technology for a few specific histopathology related problems being pursued in the United States and Europe
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