Architectural Model to Enable Power System Tradeoff Studies

We continue the development of an overall architectural model for an all-electric ship using a physics-based simulation environment to perform fully-integrated simulation of electrical, hydrodynamic, thermal, and structural components of the ship operating in a seaway. The goal of this architectural model is to develop an early-stage design tool capable of performing tradeoff studies on concepts such as AC vs. DC distribution, frequency and voltage level, inclusion of reduction gears, energy and power management options, and effect of arrangements and topology. The results of the studies will be presented in standard metrics including cost, weight, volume, efficiency/fuel consumption, reliability and survivability. We will specifically look at the hull, mechanical and electrical (HM&E) systems that support the ship and its missions; specifically, the electrical generation and distribution system, propulsion equipment, fresh- and saltwater pumping and distribution, control systems, and structural components

A method for the architectural design of distributed control systems for large, civil jet engines: a systems engineering approach

The design of distributed control systems (DCSs) for large, civil gas turbine engines is a complex architectural challenge. To date, the majority of research into DCSs has focused on the contributing technologies and high temperature electronics rather than the architecture of the system itself. This thesis proposes a method for the architectural design of distributed systems using a genetic algorithm to generate, evaluate and refine designs. The proposed designs are analysed for their architectural quality, lifecycle value and commercial benefit. The method is presented along with results proving the concept. Whilst the method described here is applied exclusively to Distributed Control System (DCS) for jet engines, the principles and methods could be adapted for a broad range of complex systems

Circuit design and analysis for on-FPGA communication systems

On-chip communication system has emerged as a prominently important subject in Very-Large- Scale-Integration (VLSI) design, as the trend of technology scaling favours logics more than interconnects. Interconnects often dictates the system performance, and, therefore, research for new methodologies and system architectures that deliver high-performance communication services across the chip is mandatory. The interconnect challenge is exacerbated in Field-Programmable Gate Array (FPGA), as a type of ASIC where the hardware can be programmed post-fabrication. Communication across an FPGA will be deteriorating as a result of interconnect scaling. The programmable fabrics, switches and the specific routing architecture also introduce additional latency and bandwidth degradation further hindering intra-chip communication performance. Past research efforts mainly focused on optimizing logic elements and functional units in FPGAs. Communication with programmable interconnect received little attention and is inadequately understood. This thesis is among the first to research on-chip communication systems that are built on top of programmable fabrics and proposes methodologies to maximize the interconnect throughput performance. There are three major contributions in this thesis: (i) an analysis of on-chip interconnect fringing, which degrades the bandwidth of communication channels due to routing congestions in reconfigurable architectures; (ii) a new analogue wave signalling scheme that significantly improves the interconnect throughput by exploiting the fundamental electrical characteristics of the reconfigurable interconnect structures. This new scheme can potentially mitigate the interconnect scaling challenges. (iii) a novel Dynamic Programming (DP)-network to provide adaptive routing in network-on-chip (NoC) systems. The DP-network architecture performs runtime optimization for route planning and dynamic routing which, effectively utilizes the in-silicon bandwidth. This thesis explores a new horizon in reconfigurable system design, in which new methodologies and concepts are proposed to enhance the on-FPGA communication throughput performance that is of vital importance in new technology processes

A model-based design flow for embedded vision applications on heterogeneous architectures

The ability to gather information from images is straightforward to human, and one of the principal input to understand external world. Computer vision (CV) is the process to extract such knowledge from the visual domain in an algorithmic fashion. The requested computational power to process these information is very high. Until recently, the only feasible way to meet non-functional requirements like performance was to develop custom hardware, which is costly, time-consuming and can not be reused in a general purpose. The recent introduction of low-power and low-cost heterogeneous embedded boards, in which CPUs are combine with heterogeneous accelerators like GPUs, DSPs and FPGAs, can combine the hardware efficiency needed for non-functional requirements with the flexibility of software development. Embedded vision is the term used to identify the application of the aforementioned CV algorithms applied in the embedded field, which usually requires to satisfy, other than functional requirements, also non-functional requirements such as real-time performance, power, and energy efficiency. Rapid prototyping, early algorithm parametrization, testing, and validation of complex embedded video applications for such heterogeneous architectures is a very challenging task. This thesis presents a comprehensive framework that: 1) Is based on a model-based paradigm. Differently from the standard approaches at the state of the art that require designers to manually model the algorithm in any programming language, the proposed approach allows for a rapid prototyping, algorithm validation and parametrization in a model-based design environment (i.e., Matlab/Simulink). The framework relies on a multi-level design and verification flow by which the high-level model is then semi-automatically refined towards the final automatic synthesis into the target hardware device. 2) Relies on a polyglot parallel programming model. The proposed model combines different programming languages and environments such as C/C++, OpenMP, PThreads, OpenVX, OpenCV, and CUDA to best exploit different levels of parallelism while guaranteeing a semi-automatic customization. 3) Optimizes the application performance and energy efficiency through a novel algorithm for the mapping and scheduling of the application 3 tasks on the heterogeneous computing elements of the device. Such an algorithm, called exclusive earliest finish time (XEFT), takes into consideration the possible multiple implementation of tasks for different computing elements (e.g., a task primitive for CPU and an equivalent parallel implementation for GPU). It introduces and takes advantage of the notion of exclusive overlap between primitives to improve the load balancing. This thesis is the result of three years of research activity, during which all the incremental steps made to compose the framework have been tested on real case studie

High performance graph analysis on parallel architectures

PhD ThesisOver the last decade pharmacology has been developing computational methods to enhance drug development and testing. A computational method called network pharmacology uses graph analysis tools to determine protein target sets that can lead on better targeted drugs for diseases as Cancer. One promising area of network-based pharmacology is the detection of protein groups that can produce better e ects if they are targeted together by drugs. However, the e cient prediction of such protein combinations is still a bottleneck in the area of computational biology. The computational burden of the algorithms used by such protein prediction strategies to characterise the importance of such proteins consists an additional challenge for the eld of network pharmacology. Such computationally expensive graph algorithms as the all pairs shortest path (APSP) computation can a ect the overall drug discovery process as needed network analysis results cannot be given on time. An ideal solution for these highly intensive computations could be the use of super-computing. However, graph algorithms have datadriven computation dictated by the structure of the graph and this can lead to low compute capacity utilisation with execution times dominated by memory latency. Therefore, this thesis seeks optimised solutions for the real-world graph problems of critical node detection and e ectiveness characterisation emerged from the collaboration with a pioneer company in the eld of network pharmacology as part of a Knowledge Transfer Partnership (KTP) / Secondment (KTS). In particular, we examine how genetic algorithms could bene t the prediction of protein complexes where their removal could produce a more e ective 'druggable' impact. Furthermore, we investigate how the problem of all pairs shortest path (APSP) computation can be bene ted by the use of emerging parallel hardware architectures as GPU- and FPGA- desktop-based accelerators. In particular, we address the problem of critical node detection with the development of a heuristic search method. It is based on a genetic algorithm that computes optimised node combinations where their removal causes greater impact than common impact analysis strategies. Furthermore, we design a general pattern for parallel network analysis on multi-core architectures that considers graph's embedded properties. It is a divide and conquer approach that decomposes a graph into smaller subgraphs based on its strongly connected components and computes the all pairs shortest paths concurrently on GPU. Furthermore, we use linear algebra to design an APSP approach based on the BFS algorithm. We use algebraic expressions to transform the problem of path computation to multiple independent matrix-vector multiplications that are executed concurrently on FPGA. Finally, we analyse how the optimised solutions of perturbation analysis and parallel graph processing provided in this thesis will impact the drug discovery process.This research was part of a Knowledge Transfer Partnership (KTP) and Knowledge Transfer Secondment (KTS) between e-therapeutics PLC and Newcastle University. It was supported as a collaborative project by e-therapeutics PLC and Technology Strategy boar

Towards continuously programmable networks

While programmability has been a feature of network devices for a long time, the past decade has seen significant enhancement of programming capability for network functions and nodes, spearheaded by the ongoing trend towards softwarization and cloudification. In his context, new design principles and technology enablers are introduced (Section 7.2) which reside at: (i) service/application provisioning level, (ii) network and resource management level, as well as (iii) network deployment and connectivity level