931,417 research outputs found
Stacking for machine learning redshifts applied to SDSS galaxies
We present an analysis of a general machine learning technique called
'stacking' for the estimation of photometric redshifts. Stacking techniques can
feed the photometric redshift estimate, as output by a base algorithm, back
into the same algorithm as an additional input feature in a subsequent learning
round. We shown how all tested base algorithms benefit from at least one
additional stacking round (or layer). To demonstrate the benefit of stacking,
we apply the method to both unsupervised machine learning techniques based on
self-organising maps (SOMs), and supervised machine learning methods based on
decision trees. We explore a range of stacking architectures, such as the
number of layers and the number of base learners per layer. Finally we explore
the effectiveness of stacking even when using a successful algorithm such as
AdaBoost. We observe a significant improvement of between 1.9% and 21% on all
computed metrics when stacking is applied to weak learners (such as SOMs and
decision trees). When applied to strong learning algorithms (such as AdaBoost)
the ratio of improvement shrinks, but still remains positive and is between
0.4% and 2.5% for the explored metrics and comes at almost no additional
computational cost.Comment: 13 pages, 3 tables, 7 figures version accepted by MNRAS, minor text
updates. Results and conclusions unchange
Industry-scale application and evaluation of deep learning for drug target prediction
Artificial intelligence (AI) is undergoing a revolution thanks to the breakthroughs of machine learning algorithms in computer vision, speech recognition, natural language processing and generative modelling. Recent works on publicly available pharmaceutical data showed that AI methods are highly promising for Drug Target prediction. However, the quality of public data might be different than that of industry data due to different labs reporting measurements, different measurement techniques, fewer samples and less diverse and specialized assays. As part of a European funded project (ExCAPE), that brought together expertise from pharmaceutical industry, machine learning, and high-performance computing, we investigated how well machine learning models obtained from public data can be transferred to internal pharmaceutical industry data. Our results show that machine learning models trained on public data can indeed maintain their predictive power to a large degree when applied to industry data. Moreover, we observed that deep learning derived machine learning models outperformed comparable models, which were trained by other machine learning algorithms, when applied to internal pharmaceutical company datasets. To our knowledge, this is the first large-scale study evaluating the potential of machine learning and especially deep learning directly at the level of industry-scale settings and moreover investigating the transferability of publicly learned target prediction models towards industrial bioactivity prediction pipelines.Web of Science121art. no. 2
Encog: Library of Interchangeable Machine Learning Models for Java and C#
This paper introduces the Encog library for Java and C#, a scalable,
adaptable, multiplatform machine learning framework that was 1st released in
2008. Encog allows a variety of machine learning models to be applied to
datasets using regression, classification, and clustering. Various supported
machine learning models can be used interchangeably with minimal recoding.
Encog uses efficient multithreaded code to reduce training time by exploiting
modern multicore processors. The current version of Encog can be downloaded
from http://www.encog.org
Knowledge representation issues in control knowledge learning
Seventeenth International Conference on Machine Learning. Stanford, CA, USA, 29 June-2 July, 2000Knowledge representation is a key issue for any machine learning task. There have already been many comparative studies about knowledge representation with respect to machine learning in classication tasks. However, apart from some work done on reinforcement learning techniques in relation to state representation, very few studies have concentrated on the eect of knowledge representation for machine learning applied to problem solving, and more specically, to planning. In this paper, we present an experimental comparative study of the eect of changing the input representation of planning domain knowledge on control knowledge learning. We show results in two classical domains using three dierent machine learning systems, that have previously shown their eectiveness on learning planning control knowledge: a pure ebl mechanism, a combination of ebl and induction (hamlet), and a Genetic Programming based system (evock).Publicad
Anomaly detection for machine learning redshifts applied to SDSS galaxies
We present an analysis of anomaly detection for machine learning redshift
estimation. Anomaly detection allows the removal of poor training examples,
which can adversely influence redshift estimates. Anomalous training examples
may be photometric galaxies with incorrect spectroscopic redshifts, or galaxies
with one or more poorly measured photometric quantity. We select 2.5 million
'clean' SDSS DR12 galaxies with reliable spectroscopic redshifts, and 6730
'anomalous' galaxies with spectroscopic redshift measurements which are flagged
as unreliable. We contaminate the clean base galaxy sample with galaxies with
unreliable redshifts and attempt to recover the contaminating galaxies using
the Elliptical Envelope technique. We then train four machine learning
architectures for redshift analysis on both the contaminated sample and on the
preprocessed 'anomaly-removed' sample and measure redshift statistics on a
clean validation sample generated without any preprocessing. We find an
improvement on all measured statistics of up to 80% when training on the
anomaly removed sample as compared with training on the contaminated sample for
each of the machine learning routines explored. We further describe a method to
estimate the contamination fraction of a base data sample.Comment: 13 pages, 8 figures, 1 table, minor text updates to macth MNRAS
accepted versio
Feature importance for machine learning redshifts applied to SDSS galaxies
We present an analysis of importance feature selection applied to photometric
redshift estimation using the machine learning architecture Decision Trees with
the ensemble learning routine Adaboost (hereafter RDF). We select a list of 85
easily measured (or derived) photometric quantities (or `features') and
spectroscopic redshifts for almost two million galaxies from the Sloan Digital
Sky Survey Data Release 10. After identifying which features have the most
predictive power, we use standard artificial Neural Networks (aNN) to show that
the addition of these features, in combination with the standard magnitudes and
colours, improves the machine learning redshift estimate by 18% and decreases
the catastrophic outlier rate by 32%. We further compare the redshift estimate
using RDF with those from two different aNNs, and with photometric redshifts
available from the SDSS. We find that the RDF requires orders of magnitude less
computation time than the aNNs to obtain a machine learning redshift while
reducing both the catastrophic outlier rate by up to 43%, and the redshift
error by up to 25%. When compared to the SDSS photometric redshifts, the RDF
machine learning redshifts both decreases the standard deviation of residuals
scaled by 1/(1+z) by 36% from 0.066 to 0.041, and decreases the fraction of
catastrophic outliers by 57% from 2.32% to 0.99%.Comment: 10 pages, 4 figures, updated to match version accepted in MNRA
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