ON THE NANOSTRUCTURE OF BIOGENIC AND BIO-INSPIRED CALCIUM CARBONATE As studied by electron microscopy techniques

Most biominerals in nature are formed from both organic and inorganic (mineral) compounds, and are thus by definition a composite material. They are hierarchically ordered from the nanoscale and often have superior mechanical properties compared to synthetic ceramics [1]. This study focusses on the structural characterisation of aragonite and calcite biominerals, combined with the investigation of formation mechanisms through the synthesis of bio-inspired or biomimetic crystals. To this end a multi-length scale study of aragonite and calcite based minerals is presented, based primarily on electron microscopy techniques and supported by Raman spectroscopy and chemical analysis of the organic compounds. Aragonite skeletal material from corals is studied in detail from the nano-to microscale. This is compared to calcium carbonate crystals precipitated in the presence of organic molecules with hydroxyl-groups, namely ethanol. Secondly, we look at the calcite based system of coccolithophores (marine algae) which precipitate their exoskeleton intracellulary. Such crystals formed in confinement are compared to the structure of synthetically produced calcite nanowires, grown in track-etch membranes. The coral’s spherulites (roughly 10-20 µm in size) were found to consist of three distinct crystalline phases. This microstructural sequence could for the first time be directly correlated to diurnal growth bands observed in optical transmission images and are linked to a light enhanced calcification process. The synthetic CaCO3 precipitation experiments showed that increasing ratios of ethanol resulted in a shift of crystal phase and morphology from single crystal rhombohedral calcite to branched polycrystalline aragonite, the latter being similar to the coral. The calcite coccoliths of Rhabdosphaera clavigera exhibit centrally positioned, several micrometre long five-fold symmetric spines. The spines are made up of spiral staircase arrangements of {104} single crystal calcite rhombohedra. However the rim of the coccolith has complex shaped, kinked, crystal elements. It was found that such unconventional crystal shapes can be promoted by external anisotropic surface stresses as was seen for the calcite nanowires investigated in this study

Computational strategies for understanding underwater optical image datasets

Thesis: Ph. D. in Mechanical and Oceanographic Engineering, Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Mechanical Engineering; and the Woods Hole Oceanographic Institution), 2013.Cataloged from PDF version of thesis.Includes bibliographical references (pages 117-135).A fundamental problem in autonomous underwater robotics is the high latency between the capture of image data and the time at which operators are able to gain a visual understanding of the survey environment. Typical missions can generate imagery at rates hundreds of times greater than highly compressed images can be transmitted acoustically, delaying that understanding until after the vehicle has been recovered and the data analyzed. While automated classification algorithms can lessen the burden on human annotators after a mission, most are too computationally expensive or lack the robustness to run in situ on a vehicle. Fast algorithms designed for mission-time performance could lessen the latency of understanding by producing low-bandwidth semantic maps of the survey area that can then be telemetered back to operators during a mission. This thesis presents a lightweight framework for processing imagery in real time aboard a robotic vehicle. We begin with a review of pre-processing techniques for correcting illumination and attenuation artifacts in underwater images, presenting our own approach based on multi-sensor fusion and a strong physical model. Next, we construct a novel image pyramid structure that can reduce the complexity necessary to compute features across multiple scales by an order of magnitude and recommend features which are fast to compute and invariant to underwater artifacts. Finally, we implement our framework on real underwater datasets and demonstrate how it can be used to select summary images for the purpose of creating low-bandwidth semantic maps capable of being transmitted acoustically.by Jeffrey W. Kaeli.Ph. D. in Mechanical and Oceanographic Engineerin

Underwater image restoration: super-resolution and deblurring via sparse representation and denoising by means of marine snow removal

Underwater imaging has been widely used as a tool in many fields, however, a major issue is the quality of the resulting images/videos. Due to the light's interaction with water and its constituents, the acquired underwater images/videos often suffer from a significant amount of scatter (blur, haze) and noise. In the light of these issues, this thesis considers problems of low-resolution, blurred and noisy underwater images and proposes several approaches to improve the quality of such images/video frames. Quantitative and qualitative experiments validate the success of proposed algorithms

Histopathological image analysis : a review

Over the past decade, dramatic increases in computational power and improvement in image analysis algorithms have allowed the development of powerful computer-assisted analytical approaches to radiological data. With the recent advent of whole slide digital scanners, tissue histopathology slides can now be digitized and stored in digital image form. Consequently, digitized tissue histopathology has now become amenable to the application of computerized image analysis and machine learning techniques. Analogous to the role of computer-assisted diagnosis (CAD) algorithms in medical imaging to complement the opinion of a radiologist, CAD algorithms have begun to be developed for disease detection, diagnosis, and prognosis prediction to complement the opinion of the pathologist. In this paper, we review the recent state of the art CAD technology for digitized histopathology. This paper also briefly describes the development and application of novel image analysis technology for a few specific histopathology related problems being pursued in the United States and Europe

U-Th dating of travertines on the Colorado Plateau: implications for the leakage of geologically stored CO2

In order to avoid the damaging climatic consequences of rising atmospheric CO2, and reduce current atmospheric CO2 concentrations to pre-industrial levels, anthropogenic CO2 emissions must be mitigated by capturing CO2 at power plants and storing it for thousands of years. Underground storage within deep geological formations, such as depleted gas and oil fields or deep saline aquifers, is the best understood solution for storage of CO2. In order for this method to gain more public and political acceptance it is important to characterise the potential causes, quantities and rates of CO2 release that could result if leakage were to occur from anthropogenic storage projects. This study examines two sites in the Colorado Plateau where faulted and actively leaking CO2 reservoirs provide natural analogues for failed anthropogenic storage sites. The two sites in question, the Little Grand Wash and northern Salt Wash graben faults are situated at the northern end of the Paradox Basin in Utah and represent classic three way traps due to juxtaposition of the shallow, north plunging Green River anticline against a set of east-west trending normal faults. In addition to active leakage sites in each area there are numerous fossilised travertine deposits. Along the Little Grand Wash fault the ancient mounds are restricted to the fault trace whereas ancient travertine mounds associated with the northern fault of the Salt Wash graben are far more numerous and occur up to ~530 m into the footwall of the fault. This more diffuse pattern of flow is due to the outcropping of unconfined aquifer units at the surface. A total of 45 U-Th dates from the majority of these travertine mounds provides a unique data set. The oldest deposits from the Little Grand Wash and northern Salt Wash graben faults produced ages of 113,912 ± 604 and 413,474 ± 15,127 years respectively. Repeat ages show reasonable reproducibility and analytical errors on results are of the order of 1% of the ages. The coupling of travertine elevation measurements with their radiometric ages gives an incision rate for each site. A rate of 0.342 m/ka for the Little Grand Wash fault relates directly to Green River incision and agrees with previous work on the Colorado Plateau, providing a further data point for characterisation of uplift of the province. For the northern fault of the Salt Wash graben a rate of 0.168 m/ka for the tributaries running through the area gives a robust method with which to estimate ages for un-dated mounds. The results of radiometric dating and incision rate age estimation of travertine mounds shows that leakage can last for timescales of 100,000’s of years, while high resolution U-Th dating of an individual mound demonstrated that leakage from a single point can last for a minimum of ~11,000 years. A range of travertine ages show that leakage to the surface has constantly switched location through time, while the presence of three mounds of distinct age at one location demonstrate that pathways can become repeatedly re-used over periods of ~45,000 years. There is no evidence of temporal periodicity in travertine deposition but there is a distinct spatial pattern of leakage as shown by localised similarities in the initial uranium chemistries of travertine mounds. Initial leakage is proximally located to the axial trace of the Green River anticline and subsequent leakage spreads from this central point along the fault plane in both east and west directions. The switching of fluid flow pathways to the surface can be explained by three main mechanisms: mineralisation, 3-phase interference of CO2 related fluid flow and seismically triggered alteration in dynamic strain acting upon the hydrology of the faults. These mechanisms have differing influences in each area - demonstrating that the behaviour of fluid flow switching in a system confined to damage zone fractures (Little Grand Wash fault) is different to a system leaking through an unconfined aquifer (northern fault of the Salt Wash graben). Coupling of travertine ages with estimates of their volumes provided a total worse case scenario for quantity of CO2 leakage of 6.2 x 10^6 ± 1.7 x 10^6 tonnes for the Little Grand Wash fault and 7.4 x 10^6 ± 2 x 10^6 tonnes for the northern fault of the Salt Wash graben. From these totals time averaged leakage rates of 55 ± 15 and 47 ± 13 tonnes/year were estimated for each fault. The leakage rate for the actively precipitating Crystal Geyser travertine (which is the result of anthropogenic exploration drilling) is estimated to be 3,153 ± 851 tonnes/year. These total and modern rates provide analogues for leakage via caprock failure and catastrophic wellbore failure. Applying them to large scale storage sites such as Weyburn and Gorgon revealed that for caprock failure complete leakage of these reservoirs will take place over timescales of 10^5-10^6 years, while for catastrophic failure of a single well complete leakage of these reservoirs could occur over as little as 10^3 – 10^4 years. This finding has important implications for the successful monitoring of anthropogenic storage sites

2015 GREAT Day Program

SUNY Geneseo’s Ninth Annual GREAT Day.https://knightscholar.geneseo.edu/program-2007/1009/thumbnail.jp

Advances in Sonar Technology

The demand to explore the largest and also one of the richest parts of our planet, the advances in signal processing promoted by an exponential growth in computation power and a thorough study of sound propagation in the underwater realm, have lead to remarkable advances in sonar technology in the last years.The work on hand is a sum of knowledge of several authors who contributed in various aspects of sonar technology. This book intends to give a broad overview of the advances in sonar technology of the last years that resulted from the research effort of the authors in both sonar systems and their applications. It is intended for scientist and engineers from a variety of backgrounds and even those that never had contact with sonar technology before will find an easy introduction with the topics and principles exposed here

Evolución química, textural y microestructural de carbonatos y sulfatos cálcicos durante la diagénesis : un estudio experimental

Tesis inédita de la Universidad Complutense de Madrid, Facultad de Ciencias Geológicas, leída el 20-01-2023Minerals have a chemical composition and crystal structure that reflect the pressure and temperature conditions of the environment in which they formed. When the conditions change, minerals usually undergo transformations to adapt themselves to these new conditions. When these transformations take place in subsurface conditions, where pressure and temperature are usually low, they are commonly driven by the action of a fluid and involve the replacement of the primary minerals by secondary phases. The presence of a fluid triggers the replacement reaction to take place through an interface coupled dissolution-precipitation (ICDP) mechanism. This mechanism makes the kinetics of the transformation to be much faster than if the transformation were developed by diffusion in solid state. Due to the ubiquity and relevance of mineral replacement reactions in subsurface geological environments, numerous experimental studies on the development of these processes in different systems have been carried out over the last two decades. However, many of the parameters controlling these fluid-driven mineral replacement processes are still poorly understood. This PhD thesis seeks to advance in this understanding. With this aim, experiments have been designed to experimentally study the replacement of calcium carbonate and sulphate phases through dissolution-crystallisation reactions that take place in the temperature range between 25°C and 200°C. The thesis is divided into 5 result chapters, which are presented as scientific article and address two major problems...Los minerales tienen una composición química y una estructura cristalina que reflejan las condiciones de presión y temperatura del entorno en el que se formaron. Cuando las condiciones cambian, los minerales sufren transformaciones para adaptarse a las nuevas condiciones del entorno. Cuando estas transformaciones tienen lugar en condiciones subsuperficiales, donde la presión y la temperatura son bajas, es común que estén catalizadas por la acción de un fluido que conduzca al reemplazamiento de los minerales primarios por fases secundarias. La presencia de un fluido hace que la reacción de reemplazamiento tenga lugar a través un mecanismo acoplado de disolución-cristalización. Este mecanismo facilita que la cinética de la transformación sea mucho más rápida que si se desarrollara por difusión en estado sólido. Debido a la ubicuidad y relevancia de las reacciones de reemplazamiento mineral en los entornos geológicos subsuperficiales, a lo largo de las últimas dos décadas se han realizado numerosos estudios experimentales acerca del desarrollo de estos procesos en distintos sistemas. Sin embargo, todavía no se comprenden bien muchos de los parámetros que controlan los procesos de reemplazamiento mineral mediados por fluidos. Esta tesis doctoral busca avanzar en esta comprensión. Para ello, se han diseñado experimentos orientados a estudiar experimentalmente el reemplazamiento de carbonatos y sulfatos cálcicos a través de reacciones de disolución-cristalización que se desarrollan en el rango de temperaturas entre 25°C y 200°C. La tesis está dividida en 5 capítulos de resultados, que se presentan en forma de artículo científico y que abordan dos grandes problemas...Fac. de Ciencias GeológicasTRUEunpu

Very High Resolution (VHR) Satellite Imagery: Processing and Applications

Recently, growing interest in the use of remote sensing imagery has appeared to provide synoptic maps of water quality parameters in coastal and inner water ecosystems;, monitoring of complex land ecosystems for biodiversity conservation; precision agriculture for the management of soils, crops, and pests; urban planning; disaster monitoring, etc. However, for these maps to achieve their full potential, it is important to engage in periodic monitoring and analysis of multi-temporal changes. In this context, very high resolution (VHR) satellite-based optical, infrared, and radar imaging instruments provide reliable information to implement spatially-based conservation actions. Moreover, they enable observations of parameters of our environment at greater broader spatial and finer temporal scales than those allowed through field observation alone. In this sense, recent very high resolution satellite technologies and image processing algorithms present the opportunity to develop quantitative techniques that have the potential to improve upon traditional techniques in terms of cost, mapping fidelity, and objectivity. Typical applications include multi-temporal classification, recognition and tracking of specific patterns, multisensor data fusion, analysis of land/marine ecosystem processes and environment monitoring, etc. This book aims to collect new developments, methodologies, and applications of very high resolution satellite data for remote sensing. The works selected provide to the research community the most recent advances on all aspects of VHR satellite remote sensing