3,183 research outputs found
Using shape entropy as a feature to lesion boundary segmentation with level sets
Accurate lesion segmentation in retinal imagery is an area of vast research. Of the many segmentation methods
available very few are insensitive to topological changes on noisy surfaces. This paper presents an extension to
earlier work on a novel stopping mechanism for level sets. The elementary features scheme (ELS) in [5] is
extended to include shape entropy as a feature used to ’look back in time’ and find the point at which the curve
best fits the real object. We compare the proposed extension against the original algorithm for timing and
accuracy using 50 randomly selected images of exudates with a database of clinician demarcated boundaries as
ground truth. While this work is presented applied to medical imagery, it can be used for any application
involving the segmentation of bright or dark blobs on noisy images
2D Face Recognition System Based on Selected Gabor Filters and Linear Discriminant Analysis LDA
We present a new approach for face recognition system. The method is based on
2D face image features using subset of non-correlated and Orthogonal Gabor
Filters instead of using the whole Gabor Filter Bank, then compressing the
output feature vector using Linear Discriminant Analysis (LDA). The face image
has been enhanced using multi stage image processing technique to normalize it
and compensate for illumination variation. Experimental results show that the
proposed system is effective for both dimension reduction and good recognition
performance when compared to the complete Gabor filter bank. The system has
been tested using CASIA, ORL and Cropped YaleB 2D face images Databases and
achieved average recognition rate of 98.9 %
Fast, scalable, Bayesian spike identification for multi-electrode arrays
We present an algorithm to identify individual neural spikes observed on
high-density multi-electrode arrays (MEAs). Our method can distinguish large
numbers of distinct neural units, even when spikes overlap, and accounts for
intrinsic variability of spikes from each unit. As MEAs grow larger, it is
important to find spike-identification methods that are scalable, that is, the
computational cost of spike fitting should scale well with the number of units
observed. Our algorithm accomplishes this goal, and is fast, because it
exploits the spatial locality of each unit and the basic biophysics of
extracellular signal propagation. Human intervention is minimized and
streamlined via a graphical interface. We illustrate our method on data from a
mammalian retina preparation and document its performance on simulated data
consisting of spikes added to experimentally measured background noise. The
algorithm is highly accurate
On orthogonal projections for dimension reduction and applications in augmented target loss functions for learning problems
The use of orthogonal projections on high-dimensional input and target data
in learning frameworks is studied. First, we investigate the relations between
two standard objectives in dimension reduction, preservation of variance and of
pairwise relative distances. Investigations of their asymptotic correlation as
well as numerical experiments show that a projection does usually not satisfy
both objectives at once. In a standard classification problem we determine
projections on the input data that balance the objectives and compare
subsequent results. Next, we extend our application of orthogonal projections
to deep learning tasks and introduce a general framework of augmented target
loss functions. These loss functions integrate additional information via
transformations and projections of the target data. In two supervised learning
problems, clinical image segmentation and music information classification, the
application of our proposed augmented target loss functions increase the
accuracy
Relative entropy minimizing noisy non-linear neural network to approximate stochastic processes
A method is provided for designing and training noise-driven recurrent neural
networks as models of stochastic processes. The method unifies and generalizes
two known separate modeling approaches, Echo State Networks (ESN) and Linear
Inverse Modeling (LIM), under the common principle of relative entropy
minimization. The power of the new method is demonstrated on a stochastic
approximation of the El Nino phenomenon studied in climate research
Blindfold learning of an accurate neural metric
The brain has no direct access to physical stimuli, but only to the spiking
activity evoked in sensory organs. It is unclear how the brain can structure
its representation of the world based on differences between those noisy,
correlated responses alone. Here we show how to build a distance map of
responses from the structure of the population activity of retinal ganglion
cells, allowing for the accurate discrimination of distinct visual stimuli from
the retinal response. We introduce the Temporal Restricted Boltzmann Machine to
learn the spatiotemporal structure of the population activity, and use this
model to define a distance between spike trains. We show that this metric
outperforms existing neural distances at discriminating pairs of stimuli that
are barely distinguishable. The proposed method provides a generic and
biologically plausible way to learn to associate similar stimuli based on their
spiking responses, without any other knowledge of these stimuli
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