Light-sheet microscopy: a tutorial

This paper is intended to give a comprehensive review of light-sheet (LS) microscopy from an optics perspective. As such, emphasis is placed on the advantages that LS microscope configurations present, given the degree of freedom gained by uncoupling the excitation and detection arms. The new imaging properties are first highlighted in terms of optical parameters and how these have enabled several biomedical applications. Then, the basics are presented for understanding how a LS microscope works. This is followed by a presentation of a tutorial for LS microscope designs, each working at different resolutions and for different applications. Then, based on a numerical Fourier analysis and given the multiple possibilities for generating the LS in the microscope (using Gaussian, Bessel, and Airy beams in the linear and nonlinear regimes), a systematic comparison of their optical performance is presented. Finally, based on advances in optics and photonics, the novel optical implementations possible in a LS microscope are highlighted.Peer ReviewedPostprint (published version

Precision near-infrared radial velocity instrumentation II: Non-Circular Core Fiber Scrambler

We have built and commissioned a prototype agitated non-circular core fiber scrambler for precision spectroscopic radial velocity measurements in the near-infrared H band. We have collected the first on-sky performance and modal noise tests of these novel fibers in the near-infrared at H and K bands using the CSHELL spectrograph at the NASA InfraRed Telescope Facility (IRTF). We discuss the design behind our novel reverse injection of a red laser for co-alignment of star-light with the fiber tip via a corner cube and visible camera. We summarize the practical details involved in the construction of the fiber scrambler, and the mechanical agitation of the fiber at the telescope. We present radial velocity measurements of a bright standard star taken with and without the fiber scrambler to quantify the relative improvement in the obtainable blaze function stability, the line spread function stability, and the resulting radial velocity precision. We assess the feasibility of applying this illumination stabilization technique to the next generation of near-infrared spectrographs such as iSHELL on IRTF and an upgraded NIRSPEC at Keck. Our results may also be applied in the visible for smaller core diameter fibers where fiber modal noise is a significant factor, such as behind an adaptive optics system or on a small < 1 meter class telescope such as is being pursued by the MINERVA and LCOGT collaborations.Comment: Proceedings of the SPIE Optics and Photonics Conference "Techniques and Instrumentation for Detection of Exoplanets VI" held in San Diego, CA, August 25-29, 201

Characterization of microdot apodizers for imaging exoplanets with next-generation space telescopes

A major science goal of future, large-aperture, optical space telescopes is to directly image and spectroscopically analyze reflected light from potentially habitable exoplanets. To accomplish this, the optical system must suppress diffracted light from the star to reveal point sources approximately ten orders of magnitude fainter than the host star at small angular separation. Coronagraphs with microdot apodizers achieve the theoretical performance needed to image Earth-like planets with a range of possible telescope designs, including those with obscured and segmented pupils. A test microdot apodizer with various bulk patterns (step functions, gradients, and sinusoids) and 4 different dot sizes (3, 5, 7, and 10 $\mu$m) made of small chrome squares on anti-reflective glass was characterized with microscopy, optical laser interferometry, as well as transmission and reflectance measurements at wavelengths of 600 and 800 nm. Microscopy revealed the microdots were fabricated to high precision. Results from laser interferometry showed that the phase shifts observed in reflection vary with the local microdot fill factor. Transmission measurements showed that microdot fill factor and transmission were linearly related for dot sizes >5 $\mu$m. However, anomalously high transmittance was measured when the dot size is <5x the wavelength and the fill factor is approximately 50%, where the microdot pattern becomes periodic. The transmission excess is not as prominent in the case of larger dot sizes suggesting that it is likely to be caused by the interaction between the incident field and electronic resonances in the surface of the metallic microdots. We used our empirical models of the microdot apodizers to optimize a second generation of reflective apodizer designs and confirmed that the amplitude and phase of the reflected beam closely matches the ideal wavefront.Comment: Space Telescopes and Instrumentation 2018: Optical, Infrared, and Millimeter Wav

Free-space propagation of high dimensional structured optical fields in an urban environment

Spatially structured optical fields have been used to enhance the functionality of a wide variety of systems that use light for sensing or information transfer. As higher-dimensional modes become a solution of choice in optical systems, it is important to develop channel models that suitably predict the effect of atmospheric turbulence on these modes. We investigate the propagation of a set of orthogonal spatial modes across a free-space channel between two buildings separated by 1.6 km. Given the circular geometry of a common optical lens, the orthogonal mode set we choose to implement is that described by the Laguerre-Gaussian (LG) field equations. Our study focuses on the preservation of phase purity, which is vital for spatial multiplexing and any system requiring full quantumstate tomography. We present experimental data for the modal degradation in a real urban environment and draw a comparison to recognized theoretical predictions of the link. Our findings indicate that adaptations to channel models are required to simulate the effects of atmospheric turbulence placed on high-dimensional structured modes that propagate over a long distance. Our study indicates that with mitigation of vortex splitting, potentially through precorrection techniques, one could overcome the challenges in a real point-to-point free-space channel in an urban environment

Making SPIFFI SPIFFIER: Upgrade of the SPIFFI instrument for use in ERIS and performance analysis from re-commissioning

SPIFFI is an AO-fed integral field spectrograph operating as part of SINFONI on the VLT, which will be upgraded and reused as SPIFFIER in the new VLT instrument ERIS. In January 2016, we used new technology developments to perform an early upgrade to optical subsystems in the SPIFFI instrument so ongoing scientific programs can make use of enhanced performance before ERIS arrives in 2020. We report on the upgraded components and the performance of SPIFFI after the upgrade, including gains in throughput and spatial and spectral resolution. We show results from re-commissioning, highlighting the potential for scientific programs to use the capabilities of the upgraded SPIFFI. Finally, we discuss the additional upgrades for SPIFFIER which will be implemented before it is integrated into ERIS.Comment: 20 pages, 12 figures. Proceedings from SPIE Astronomical Telescopes and Instrumentation 201

Impact of parameter variations on circuits and microarchitecture

Parameter variations, which are increasing along with advances in process technologies, affect both timing and power. Variability must be considered at both the circuit and microarchitectural design levels to keep pace with performance scaling and to keep power consumption within reasonable limits. This article presents an overview of the main sources of variability and surveys variation-tolerant circuit and microarchitectural approaches.Peer ReviewedPostprint (published version

ShaneAO: wide science spectrum adaptive optics system for the Lick Observatory

A new high-order adaptive optics system is now being commissioned at the Lick Observatory Shane 3-meter telescope in California. This system uses a high return efficiency sodium beacon and a combination of low and high-order deformable mirrors to achieve diffraction-limited imaging over a wide spectrum of infrared science wavelengths covering 0.8 to 2.2 microns. We present the design performance goals and the first on-sky test results. We discuss several innovations that make this system a pathfinder for next generation AO systems. These include a unique woofer-tweeter control that provides full dynamic range correction from tip/tilt to 16 cycles, variable pupil sampling wavefront sensor, new enhanced silver coatings developed at UC Observatories that improve science and LGS throughput, and tight mechanical rigidity that enables a multi-hour diffraction- limited exposure in LGS mode for faint object spectroscopy science.Comment: 11 pages, 10 figures. Presented at SPIE Astronomical Telescopes + Instrumentation conference, paper 9148-7

Starlight Demonstration of the Dragonfly Instrument: an Integrated Photonic Pupil Remapping Interferometer for High Contrast Imaging

In the two decades since the first extra-solar planet was discovered, the detection and characterization of extra-solar planets has become one of the key endeavors in all of modern science. Recently direct detection techniques such as interferometry or coronography have received growing attention because they reveal the population of exoplanets inaccessible to Doppler or transit techniques, and moreover they allow the faint signal from the planet itself to be investigated. Next-generation stellar interferometers are increasingly incorporating photonic technologies due to the increase in fidelity of the data generated. Here, we report the design, construction and commissioning of a new high contrast imager; the integrated pupil-remapping interferometer; an instrument we expect will find application in the detection of young faint companions in the nearest star-forming regions. The laboratory characterisation of the instrument demonstrated high visibility fringes on all interferometer baselines in addition to stable closure phase signals. We also report the first successful on-sky experiments with the prototype instrument at the 3.9-m Anglo-Australian Telescope. Performance metrics recovered were consistent with ideal device behaviour after accounting for expected levels of decoherence and signal loss from the uncompensated seeing. The prospect of complete Fourier-coverage coupled with the current performance metrics means that this photonically-enhanced instrument is well positioned to contribute to the science of high contrast companions.Comment: 10 pages, 7 figures, accepted to Mon. Not. of Roy. Ast. Soc., 201

Multi-Conjugate Adaptive Optics Simulator for the Thirty Meter Telescope: Design, Implementation, and Results

We present a multi-conjugate adaptive optics (MCAO) system simulator bench, HeNOS (Herzberg NFIRAOS Optical Simulator). HeNOS is developed to validate the performance of the MCAO system for the Thirty Meter Telescope, as well as to demonstrate techniques critical for future AO developments. In this paper, we focus on describing the derivations of parameters that scale the 30-m telescope AO system down to a bench experiment and explain how these parameters are practically implemented on an optical bench. While referring other papers for details of AO technique developments using HeNOS, we introduce the functionality of HeNOS, in particular, three different single-conjugate AO modes that HeNOS currently offers: a laser guide star AO with a Shack-Hartmann wavefront sensor, a natural guide star AO with a pyramid wavefront sensor, and a laser guide star AO with a sodium spot elongation on the Shack-Hartmann corrected by a truth wavefront sensing on a natural guide star. Laser tomography AO and ultimate MCAO are being prepared to be implemented in the near future

On-sky single-mode fiber coupling measurements at the Large Binocular Telescope

The demonstration of efficient single-mode fiber (SMF) coupling is a key requirement for the development of a compact, ultra-precise radial velocity (RV) spectrograph. iLocater is a next generation instrument for the Large Binocular Telescope (LBT) that uses adaptive optics (AO) to inject starlight into a SMF. In preparation for commissioning iLocater, a prototype SMF injection system was installed and tested at the LBT in the Y-band (0.970-1.065 $\mu$m). This system was designed to verify the capability of the LBT AO system as well as characterize on-sky SMF coupling efficiencies. SMF coupling was measured on stars with variable airmasses, apparent magnitudes, and seeing conditions for six half-nights using the Large Binocular Telescope Interferometer. We present the overall optical and mechanical performance of the SMF injection system, including details of the installation and alignment procedure. A particular emphasis is placed on analyzing the instrument's performance as a function of telescope elevation to inform the final design of the fiber injection system for iLocater.Comment: 11 pages, 7 figure