Neighbourhood Abstraction in GROOVE - Tool Paper

In this paper we discuss the implementation of neighbourhood graph abstraction in the GROOVE tool set. Important classes of graph grammars may have unbounded state spaces and therefore cannot be verified with traditional model checking techniques. One way to address this problem is to perform graph abstraction, which allows us to generate a finite abstract state space that over-approximates the original one. In previous work we presented the theory of neighbourhood abstraction. In this paper, we present the implementation of this theory in GROOVE and illustrate its applicability with a case study that models a single-linked list

Abstracting Asynchronous Multi-Valued Networks: An Initial Investigation

Multi-valued networks provide a simple yet expressive qualitative state based modelling approach for biological systems. In this paper we develop an abstraction theory for asynchronous multi-valued network models that allows the state space of a model to be reduced while preserving key properties of the model. The abstraction theory therefore provides a mechanism for coping with the state space explosion problem and supports the analysis and comparison of multi-valued networks. We take as our starting point the abstraction theory for synchronous multi-valued networks which is based on the finite set of traces that represent the behaviour of such a model. The problem with extending this approach to the asynchronous case is that we can now have an infinite set of traces associated with a model making a simple trace inclusion test infeasible. To address this we develop a decision procedure for checking asynchronous abstractions based on using the finite state graph of an asynchronous multi-valued network to reason about its trace semantics. We illustrate the abstraction techniques developed by considering a detailed case study based on a multi-valued network model of the regulation of tryptophan biosynthesis in Escherichia coli.Comment: Presented at MeCBIC 201

Fragments of Frege's Grundgesetze and G\"odel's Constructible Universe

Frege's Grundgesetze was one of the 19th century forerunners to contemporary set theory which was plagued by the Russell paradox. In recent years, it has been shown that subsystems of the Grundgesetze formed by restricting the comprehension schema are consistent. One aim of this paper is to ascertain how much set theory can be developed within these consistent fragments of the Grundgesetze, and our main theorem shows that there is a model of a fragment of the Grundgesetze which defines a model of all the axioms of Zermelo-Fraenkel set theory with the exception of the power set axiom. The proof of this result appeals to G\"odel's constructible universe of sets, which G\"odel famously used to show the relative consistency of the continuum hypothesis. More specifically, our proofs appeal to Kripke and Platek's idea of the projectum within the constructible universe as well as to a weak version of uniformization (which does not involve knowledge of Jensen's fine structure theory). The axioms of the Grundgesetze are examples of abstraction principles, and the other primary aim of this paper is to articulate a sufficient condition for the consistency of abstraction principles with limited amounts of comprehension. As an application, we resolve an analogue of the joint consistency problem in the predicative setting.Comment: Forthcoming in The Journal of Symbolic Logi

Fregean abstraction in Zermelo-Fraenkel set theory: a deflationary account

The standard treatment of sets and definable classes in first-order Zermelo-Fraenkel set theory accords in many respects with the Fregean foundational framework, such as the distinction between objects and concepts. Nevertheless, in set theory we may define an explicit association of definable classes with set objects $F\mapsto\varepsilon F$ in such a way, I shall prove, to realize Frege's Basic Law V as a ZF theorem scheme, Russell notwithstanding. A similar analysis applies to the Cantor-Hume principle and to Fregean abstraction generally. Because these extension and abstraction operators are definable, they provide a deflationary account of Fregean abstraction, one expressible in and reducible to set theory -- every assertion in the language of set theory allowing the extension and abstraction operators $\varepsilon F$, $\# G$, $\alpha H$ is equivalent to an assertion not using them. The analysis thus sidesteps Russell's argument, which is revealed not as a refutation of Basic Law~V as such, but rather as a version of Tarski's theorem on the nondefinability of truth, showing that the proto-truth-predicate "$x$ falls under the concept of which $y$ is the extension" is not expressible.Comment: 22 pages. Commentary can be made on the author's blog at http://jdh.hamkins.org/fregean-abstraction-deflationary-accoun

High-Order Metaphysics as High-Order Abstractions and Choice in Set Theory

The link between the high-order metaphysics and abstractions, on the one hand, and choice in the foundation of set theory, on the other hand, can distinguish unambiguously the “good” principles of abstraction from the “bad” ones and thus resolve the “bad company problem” as to set theory. Thus it implies correspondingly a more precise definition of the relation between the axiom of choice and “all company” of axioms in set theory concerning directly or indirectly abstraction: the principle of abstraction, axiom of comprehension, axiom scheme of specification, axiom scheme of separation, subset axiom scheme, axiom scheme of replacement, axiom of unrestricted comprehension, axiom of extensionality, etc

Guidelines For Pursuing and Revealing Data Abstractions

Many data abstraction types, such as networks or set relationships, remain unfamiliar to data workers beyond the visualization research community. We conduct a survey and series of interviews about how people describe their data, either directly or indirectly. We refer to the latter as latent data abstractions. We conduct a Grounded Theory analysis that (1) interprets the extent to which latent data abstractions exist, (2) reveals the far-reaching effects that the interventionist pursuit of such abstractions can have on data workers, (3) describes why and when data workers may resist such explorations, and (4) suggests how to take advantage of opportunities and mitigate risks through transparency about visualization research perspectives and agendas. We then use the themes and codes discovered in the Grounded Theory analysis to develop guidelines for data abstraction in visualization projects. To continue the discussion, we make our dataset open along with a visual interface for further exploration

Abstraction in parameterised Boolean equation systems

We present a general theory of abstraction for a variety of verification problems. Our theory is set in the framework of parameterized Boolean equation systems. The power of our abstraction theory is compared to that of generalised Kripke modal transition systems (GTSs). We show that for model checking the modal µ-calculus, our abstractions can be exponentially more succinct than GTSs and our theory is as complete as the GTS framework for abstraction. Furthermore, we investigate the completeness of our theory for verification problems other than the modal µ-calculus. We illustrate the potential of our theory through case studies using the first-order modal µ-calculus and a real-time extension thereof, conducted using a prototype implementation of a new syntactic transformation for equation systems

The gauge action, DG Lie algebra and identities for Bernoulli numbers

In this paper we prove a family of identities for Bernoulli numbers parameterized by triples of integers $(a,b,c)$ with $a+b+c=n-1$, $n\ge 4$. These identities are deduced while translating into homotopical terms the gauge action on the Maurer Cartan Set which can be seen an abstraction of the behaviour of gauge infinitesimal transformations in classical gauge theory. We show that Euler and Miki's identities, well known and apparently non related formulas, are linear combinations of our family and they satisfy a particular symmetry relation.Comment: Small modifications. To appear in Forum Mathematicu