Modularity and the spread of perturbations in complex dynamical systems

We propose a method to decompose dynamical systems based on the idea that modules constrain the spread of perturbations. We find partitions of system variables that maximize 'perturbation modularity', defined as the autocovariance of coarse-grained perturbed trajectories. The measure effectively separates the fast intramodular from the slow intermodular dynamics of perturbation spreading (in this respect, it is a generalization of the 'Markov stability' method of network community detection). Our approach captures variation of modular organization across different system states, time scales, and in response to different kinds of perturbations: aspects of modularity which are all relevant to real-world dynamical systems. It offers a principled alternative to detecting communities in networks of statistical dependencies between system variables (e.g., 'relevance networks' or 'functional networks'). Using coupled logistic maps, we demonstrate that the method uncovers hierarchical modular organization planted in a system's coupling matrix. Additionally, in homogeneously-coupled map lattices, it identifies the presence of self-organized modularity that depends on the initial state, dynamical parameters, and type of perturbations. Our approach offers a powerful tool for exploring the modular organization of complex dynamical systems

A framework for community detection in heterogeneous multi-relational networks

There has been a surge of interest in community detection in homogeneous single-relational networks which contain only one type of nodes and edges. However, many real-world systems are naturally described as heterogeneous multi-relational networks which contain multiple types of nodes and edges. In this paper, we propose a new method for detecting communities in such networks. Our method is based on optimizing the composite modularity, which is a new modularity proposed for evaluating partitions of a heterogeneous multi-relational network into communities. Our method is parameter-free, scalable, and suitable for various networks with general structure. We demonstrate that it outperforms the state-of-the-art techniques in detecting pre-planted communities in synthetic networks. Applied to a real-world Digg network, it successfully detects meaningful communities.Comment: 27 pages, 10 figure

Communities, Knowledge Creation, and Information Diffusion

In this paper, we examine how patterns of scientific collaboration contribute to knowledge creation. Recent studies have shown that scientists can benefit from their position within collaborative networks by being able to receive more information of better quality in a timely fashion, and by presiding over communication between collaborators. Here we focus on the tendency of scientists to cluster into tightly-knit communities, and discuss the implications of this tendency for scientific performance. We begin by reviewing a new method for finding communities, and we then assess its benefits in terms of computation time and accuracy. While communities often serve as a taxonomic scheme to map knowledge domains, they also affect how successfully scientists engage in the creation of new knowledge. By drawing on the longstanding debate on the relative benefits of social cohesion and brokerage, we discuss the conditions that facilitate collaborations among scientists within or across communities. We show that successful scientific production occurs within communities when scientists have cohesive collaborations with others from the same knowledge domain, and across communities when scientists intermediate among otherwise disconnected collaborators from different knowledge domains. We also discuss the implications of communities for information diffusion, and show how traditional epidemiological approaches need to be refined to take knowledge heterogeneity into account and preserve the system's ability to promote creative processes of novel recombinations of idea

Bloggers Behavior and Emergent Communities in Blog Space

Interactions between users in cyberspace may lead to phenomena different from those observed in common social networks. Here we analyse large data sets about users and Blogs which they write and comment, mapped onto a bipartite graph. In such enlarged Blog space we trace user activity over time, which results in robust temporal patterns of user--Blog behavior and the emergence of communities. With the spectral methods applied to the projection on weighted user network we detect clusters of users related to their common interests and habits. Our results suggest that different mechanisms may play the role in the case of very popular Blogs. Our analysis makes a suitable basis for theoretical modeling of the evolution of cyber communities and for practical study of the data, in particular for an efficient search of interesting Blog clusters and further retrieval of their contents by text analysis

A smart local moving algorithm for large-scale modularity-based community detection

We introduce a new algorithm for modularity-based community detection in large networks. The algorithm, which we refer to as a smart local moving algorithm, takes advantage of a well-known local moving heuristic that is also used by other algorithms. Compared with these other algorithms, our proposed algorithm uses the local moving heuristic in a more sophisticated way. Based on an analysis of a diverse set of networks, we show that our smart local moving algorithm identifies community structures with higher modularity values than other algorithms for large-scale modularity optimization, among which the popular 'Louvain algorithm' introduced by Blondel et al. (2008). The computational efficiency of our algorithm makes it possible to perform community detection in networks with tens of millions of nodes and hundreds of millions of edges. Our smart local moving algorithm also performs well in small and medium-sized networks. In short computing times, it identifies community structures with modularity values equally high as, or almost as high as, the highest values reported in the literature, and sometimes even higher than the highest values found in the literature

Consensus clustering in complex networks

The community structure of complex networks reveals both their organization and hidden relationships among their constituents. Most community detection methods currently available are not deterministic, and their results typically depend on the specific random seeds, initial conditions and tie-break rules adopted for their execution. Consensus clustering is used in data analysis to generate stable results out of a set of partitions delivered by stochastic methods. Here we show that consensus clustering can be combined with any existing method in a self-consistent way, enhancing considerably both the stability and the accuracy of the resulting partitions. This framework is also particularly suitable to monitor the evolution of community structure in temporal networks. An application of consensus clustering to a large citation network of physics papers demonstrates its capability to keep track of the birth, death and diversification of topics.Comment: 11 pages, 12 figures. Published in Scientific Report