Visual Debugging of Object-Oriented Systems with the Unified Modeling Language

The Department of Defense (DoD) is developing a Joint Battlespace Infosphere, linking a large number of data sources and user applications. Debugging and analysis tools are required to aid in this process. Debugging of large object-oriented systems is a difficult cognitive process that requires understanding of both the overall and detailed behavior of the application. In addition, many such applications linked through a distributed system add to this complexity. Standard debuggers do not utilize visualization techniques, focusing mainly on information extracted directly from the source code. To overcome this deficiency, this research designs and implements a methodology that enables developers to analyze, troubleshoot and evaluate object-oriented systems using visualization techniques. It uses the standard UML class diagram coupled with visualization features such as focus+context, animation, graph layout, color encoding and filtering techniques to organize and present information in a manner that facilitates greater program and system comprehension. Multiple levels of abstraction, from low-level details such as source code and variable information to high-level structural detail in the form of a UML class diagram are accessible along with views of the program s control flow. The methods applied provide a considerable improvement (up to 1110%) in the number of classes that can be displayed in a set display area while still preserving user context and the semantics of UML, thus maintaining system understanding. Usability tests validated the application in terms of three criteria software visualization, debugging, and general system usability

Contrasting Views of Complexity and Their Implications For Network-Centric Infrastructures

There exists a widely recognized need to better understand and manage complex “systems of systems,” ranging from biology, ecology, and medicine to network-centric technologies. This is motivating the search for universal laws of highly evolved systems and driving demand for new mathematics and methods that are consistent, integrative, and predictive. However, the theoretical frameworks available today are not merely fragmented but sometimes contradictory and incompatible. We argue that complexity arises in highly evolved biological and technological systems primarily to provide mechanisms to create robustness. However, this complexity itself can be a source of new fragility, leading to “robust yet fragile” tradeoffs in system design. We focus on the role of robustness and architecture in networked infrastructures, and we highlight recent advances in the theory of distributed control driven by network technologies. This view of complexity in highly organized technological and biological systems is fundamentally different from the dominant perspective in the mainstream sciences, which downplays function, constraints, and tradeoffs, and tends to minimize the role of organization and design

On BIM based automatized nD modelling for construction management

Práce nastiňuje nový přístup k automatizovanému vytváření diskrétních modelů nD BIM prostřednictvím propojení a využití stávající metody CONTEC (stavební technologie), původně navržené pro automatizované plánování stavebních technologií a řízení projektů na základě údajů v podobě rozpočtu nebo rozpisu množství. CONTEC umožňuje automatizaci výroby dat modelu nD, jako je například plán (4D) včetně plánování zdrojů distribuce práce, rozpočet (5D) – založený na připojeném cenovém systému, ale také údaje nD, jako jsou plány na ochranu zdraví a bezpečnosti (plán rizik BOZP), KZP a kontrolních plánů BOZP a environmentálních plánů. Práce zahrnuje praktický příklad propojení stávajícího modelu BIM bez klasifikačního systému do systému CONTEC a automatizovaného vytváření výše zmíněných modelů protokolu nD. Navrhovaná metoda je použitelná i pro stávající klasifikační systémy, ale je užitečná zejména v zemích, kde je vývoj BIM v raných fázích.Thesis outlines new approach in automated creation of the discrete nD BIM models by interlinking and utilization of existing CONTEC (Construction Technology) method, originally designed for automated construction technology planning and project management based on data in the form of budget or bill of quantities. CONTEC enables automation in production of nD model data such as schedule(4D) including work distribution end resource planning, budget(5D) – based on attached pricing system, but also nD data such, as health and safety risks plans (H&S Risk register), quality plans and quality assurance checklists including their monitoring and Environmental plans. Thesis includes practical example of interlinking existing BIM model without classification system to the CONTEC system and automated creation of above mentioned nD models. Proposed method is applicable also to existing classification systems but is especially useful in countries where development of BIM is in early stages

Diagnostic Applications for Micro-Synchrophasor Measurements

This report articulates and justifies the preliminary selection of diagnostic applications for data from micro-synchrophasors (µPMUs) in electric power distribution systems that will be further studied and developed within the scope of the three-year ARPA-e award titled Micro-synchrophasors for Distribution Systems

Inverse software configuration management

Software systems are playing an increasingly important role in almost every aspect of today’s society such that they impact on our businesses, industry, leisure, health and safety. Many of these systems are extremely large and complex and depend upon the correct interaction of many hundreds or even thousands of heterogeneous components. Commensurate with this increased reliance on software is the need for high quality products that meet customer expectations, perform reliably and which can be cost-effectively and safely maintained. Techniques such as software configuration management have proved to be invaluable during the development process to ensure that this is the case. However, there are a very large number of legacy systems which were not developed under controlled conditions, but which still, need to be maintained due to the heavy investment incorporated within them. Such systems are characterised by extremely high program comprehension overheads and the probability that new errors will be introduced during the maintenance process often with serious consequences. To address the issues concerning maintenance of legacy systems this thesis has defined and developed a new process and associated maintenance model, Inverse Software Configuration Management (ISCM). This model centres on a layered approach to the program comprehension process through the definition of a number of software configuration abstractions. This information together with the set of rules for reclaiming the information is stored within an Extensible System Information Base (ESIB) via, die definition of a Programming-in-the- Environment (PITE) language, the Inverse Configuration Description Language (ICDL). In order to assist the application of the ISCM process across a wide range of software applications and system architectures, die PISCES (Proforma Identification Scheme for Configurations of Existing Systems) method has been developed as a series of defined procedures and guidelines. To underpin the method and to offer a user-friendly interface to the process a series of templates, the Proforma Increasing Complexity Series (PICS) has been developed. To enable the useful employment of these techniques on large-scale systems, the subject of automation has been addressed through the development of a flexible meta-CASE environment, the PISCES M4 (MultiMedia Maintenance Manager) system. Of particular interest within this environment is the provision of a multimedia user interface (MUI) to die maintenance process. As a means of evaluating the PISCES method and to provide feedback into die ISCM process a number of practical applications have been modelled. In summary, this research has considered a number of concepts some of which are innovative in themselves, others of which are used in an innovative manner. In combination these concepts may be considered to considerably advance the knowledge and understanding of die comprehension process during the maintenance of legacy software systems. A number of publications have already resulted from the research and several more are in preparation. Additionally a number of areas for further study have been identified some of which are already underway as funded research and development projects

Modeling formalisms in systems biology

Systems Biology has taken advantage of computational tools and high-throughput experimental data to model several biological processes. These include signaling, gene regulatory, and metabolic networks. However, most of these models are specific to each kind of network. Their interconnection demands a whole-cell modeling framework for a complete understanding of cellular systems. We describe the features required by an integrated framework for modeling, analyzing and simulating biological processes, and review several modeling formalisms that have been used in Systems Biology including Boolean networks, Bayesian networks, Petri nets, process algebras, constraint-based models, differential equations, rule-based models, interacting state machines, cellular automata, and agent-based models. We compare the features provided by different formalisms, and discuss recent approaches in the integration of these formalisms, as well as possible directions for the future.Research supported by grants SFRH/BD/35215/2007 and SFRH/BD/25506/2005 from the Fundacao para a Ciencia e a Tecnologia (FCT) and the MIT-Portugal Program through the project "Bridging Systems and Synthetic Biology for the development of improved microbial cell factories" (MIT-Pt/BS-BB/0082/2008)