An Integrative Remote Sensing Application of Stacked Autoencoder for Atmospheric Correction and Cyanobacteria Estimation Using Hyperspectral Imagery

Hyperspectral image sensing can be used to effectively detect the distribution of harmful cyanobacteria. To accomplish this, physical- and/or model-based simulations have been conducted to perform an atmospheric correction (AC) and an estimation of pigments, including phycocyanin (PC) and chlorophyll-a (Chl-a), in cyanobacteria. However, such simulations were undesirable in certain cases, due to the difficulty of representing dynamically changing aerosol and water vapor in the atmosphere and the optical complexity of inland water. Thus, this study was focused on the development of a deep neural network model for AC and cyanobacteria estimation, without considering the physical formulation. The stacked autoencoder (SAE) network was adopted for the feature extraction and dimensionality reduction of hyperspectral imagery. The artificial neural network (ANN) and support vector regression (SVR) were sequentially applied to achieve AC and estimate cyanobacteria concentrations (i.e., SAE-ANN and SAE-SVR). Further, the ANN and SVR models without SAE were compared with SAE-ANN and SAE-SVR models for the performance evaluations. In terms of AC performance, both SAE-ANN and SAE-SVR displayed reasonable accuracy with the Nash???Sutcliffe efficiency (NSE) > 0.7. For PC and Chl-a estimation, the SAE-ANN model showed the best performance, by yielding NSE values > 0.79 and > 0.77, respectively. SAE, with fine tuning operators, improved the accuracy of the original ANN and SVR estimations, in terms of both AC and cyanobacteria estimation. This is primarily attributed to the high-level feature extraction of SAE, which can represent the spatial features of cyanobacteria. Therefore, this study demonstrated that the deep neural network has a strong potential to realize an integrative remote sensing application

Optimal Exploitation of the Sentinel-2 Spectral Capabilities for Crop Leaf Area Index Mapping

The continuously increasing demand of accurate quantitative high quality information on land surface properties will be faced by a new generation of environmental Earth observation (EO) missions. One current example, associated with a high potential to contribute to those demands, is the multi-spectral ESA Sentinel-2 (S2) system. The present study focuses on the evaluation of spectral information content needed for crop leaf area index (LAI) mapping in view of the future sensors. Data from a field campaign were used to determine the optimal spectral sampling from available S2 bands applying inversion of a radiative transfer model (PROSAIL) with look-up table (LUT) and artificial neural network (ANN) approaches. Overall LAI estimation performance of the proposed LUT approach (LUTN₅₀) was comparable in terms of retrieval performances with a tested and approved ANN method. Employing seven- and eight-band combinations, the LUTN₅₀ approach obtained LAI RMSE of 0.53 and normalized LAI RMSE of 0.12, which was comparable to the results of the ANN. However, the LUTN50 method showed a higher robustness and insensitivity to different band settings. Most frequently selected wavebands were located in near infrared and red edge spectral regions. In conclusion, our results emphasize the potential benefits of the Sentinel-2 mission for agricultural applications

Technique for validating remote sensing products of water quality

Remote sensing of water quality is initiated as an additional part of the on going activities of the EAGLE2006 project. Within this context intensive in-situ and airborne measurements campaigns were carried out over the Wolderwijd and Veluwemeer natural waters. However, in-situ measurements and image acquisitions were not simultaneous. This poses some constraints on validating air/space-borne remote sensing products of water quality. Nevertheless, the detailed insitu measurements and hydro-optical model simulations provide a bench mark for validating remote sensing products. That is realized through developing a stochastic technique to quantify the uncertainties on the retrieved aquatic inherent optical properties (IOP). The output of the proposed technique is applied to validate remote sensing products of water quality. In this processing phase, simulations of the radiative transfer in the coupled atmosphere-water system are performed to generate spectra at-sensor-level. The upper and the lower boundaries of perturbations, around each recorded spectrum, are then modelled as function of residuals between simulated and measured spectra. The perturbations are parameterized as a function of model approximations/inversion, sensor-noise and atmospheric residual signal. All error sources are treated as being of stochastic nature. Three scenarios are considered: spectrally correlated (i.e. wavelength dependent) perturbations, spectrally uncorrelated perturbations and a mixed scenario of the previous two with equal probability of occurrence. Uncertainties on the retrieved IOP are quantified with the relative contribution of each perturbation component to the total error budget of the IOP. This technique can be used to validate earth observation products of water quality in remote areas where few or no in– situ measurements are available

Estimation of leaf area index and its sunlit portion from DSCOVR EPIC data: theoretical basis

This paper presents the theoretical basis of the algorithm designed for the generation of leaf area index and diurnal course of its sunlit portion from NASA's Earth Polychromatic Imaging Camera (EPIC) onboard NOAA's Deep Space Climate Observatory (DSCOVR). The Look-up-Table (LUT) approach implemented in the MODIS operational LAI/FPAR algorithm is adopted. The LUT, which is the heart of the approach, has been significantly modified. First, its parameterization incorporates the canopy hot spot phenomenon and recent advances in the theory of canopy spectral invariants. This allows more accurate decoupling of the structural and radiometric components of the measured Bidirectional Reflectance Factor (BRF), improves scaling properties of the LUT and consequently simplifies adjustments of the algorithm for data spatial resolution and spectral band compositions. Second, the stochastic radiative transfer equations are used to generate the LUT for all biome types. The equations naturally account for radiative effects of the three-dimensional canopy structure on the BRF and allow for an accurate discrimination between sunlit and shaded leaf areas. Third, the LUT entries are measurable, i.e., they can be independently derived from both below canopy measurements of the transmitted and above canopy measurements of reflected radiation fields. This feature makes possible direct validation of the LUT, facilitates identification of its deficiencies and development of refinements. Analyses of field data on canopy structure and leaf optics collected at 18 sites in the Hyytiälä forest in southern boreal zone in Finland and hyperspectral images acquired by the EO-1 Hyperion sensor support the theoretical basis.Shared Services Center NAS

Use of Hyperspectral Remote Sensing to Estimate Water Quality

Approximating and forecasting water variables like phosphorus, nitrogen, chlorophyll, dissolved organic matter, and turbidity are of supreme importance due to their strong influence on water resource quality. This chapter is aimed at showing the practicability of merging water quality observations from remote sensing with water quality modeling for efficient and effective monitoring of water quality. We examine the spatial dynamics of water quality with hyperspectral remote sensing and present approaches that can be used to estimate water quality using hyperspectral images. The methods presented here have been embraced because the blue-green and green algae peak wavelengths reflectance are close together and make their distinction more challenging. It has also been established that hyperspectral imagers permit an improved recognition of chlorophyll and hereafter algae, due to acquired narrow spectral bands between 450 nm and 600 nm. We start by describing the practical application of hyperspectral remote sensing data in water quality modeling. The surface inherent optical properties of absorption and backscattering of chlorophyll a, colored dissolved organic matter (CDOM), and turbidity are estimated, and a detailed approach on analyzing ARCHER data for water quality estimation is presented

Using hyperspectral remote sensing data for retrieving canopy water content

Canopy water content (CWC) is important for understanding functioning of terrestrial ecosystems. Spectral derivatives at the slopes of the 970 nm and 1200 nm water absorption features offer good potential as estimators for CWC. An extensively grazed fen meadow is used as test site in this study. Results are compared with simulations with the PROSAIL radiative transfer model. The first derivative at the left slope of the feature at 970 nm is found to be highly correlated with CWC and the relationship corresponds to the one found with PROSAIL simulations. Use of the derivative over the 940 – 950 nm interval is suggested. In order to avoid interference with absorption by atmospheric water vapour, the potential of estimating CWC using the first derivative at the right slope of the 970 nm absorption feature is recommended. Correlations are a bit lower than those at the left slope, but better than those obtained with water band indices, as shown in previous studies. FieldSpec measurements show that one may use derivatives around the middle of the right slope within the interval between 1015 nm and 1050 nm

Automatic retrieval of crop characteristics: an example for hyperspectral AHS data from the AgriSAR campaign.

This paper presents the results of automated extraction of crop characteristics from hyperspectral earth observation data. The data was acquired with an airborne AHS imaging spectrometer in the framework of the joint European AgriSAR 2006 campaign. The AgriSAR campaign was directed by the ESA and took place at the DEMMIN test site in northeast Germany, an agricultural area dominated by large monocultures. An important objective of this campaign was to establish to what degree novel radar and optical technologies are able to provide accurate agro-meteorological parameters for precision farming purposes. Parameter retrieval in this study was performed with the CRASh approach, a software module based on the inversion of radiative transfer models. CRASh was developed at DLR as part of an automated operative processing chain for future hyperspectral missions. Validation of the model inversion results was performed with field measurements of leaf area index and leaf chlorophyll content which were carried out for winter wheat, winter barley, winter rape, maize, and sugar beet at two time steps during the 2006 growing season. Although spatial patterns of the model results generally coincide with the trends observed in the field, absolute accuracy of the fully automatically extracted variables appeared insufficient for precision agriculture purposes. The unsatisfying results are ascribed to a combination of causes, including angular anisotropy across the swath-width of the flight lines, the configuration of the applied bands, and the large number of model inversion solutions inherent to an automated environment in which little additional information on the observed canopy is present. Employing the airborne version of CRASh and incorporating a priori information on land cover and variable distributions is expected to drastically increase the retrieval performance