A Distributed Rough Set Theory based Algorithm for an Efficient Big Data Pre-processing under the Spark Framework

Big Data reduction is a main point of interest across a wide variety of fields. This domain was further investigated when the difficulty in quickly acquiring the most useful information from the huge amount of data at hand was encountered. To achieve the task of data reduction, specifically feature selection, several state-of-the-art methods were proposed. However, most of them require additional information about the given data for thresholding, noise levels to be specified or they even need a feature ranking procedure. Thus, it seems necessary to think about a more adequate feature selection technique which can extract features using information contained within the dataset alone. Rough Set Theory (RST) can be used as such a technique to discover data dependencies and to reduce the number of features contained in a dataset using the data alone, requiring no additional information. However, despite being a powerful feature selection technique, RST is computationally expensive and only practical for small datasets. Therefore, in this paper, we present a novel efficient distributed Rough Set Theory based algorithm for large-scale data pre-processing under the Spark framework. Our experimental results show the efficient applicability of our RST solution to Big Data without any significant information loss.authorsversio

Efficient and Scalable Techniques for Multivariate Time Series Analysis and Search

Innovation and advances in technology have led to the growth of time series data at a phenomenal rate in many applications. Query processing and the analysis of time series data have been studied and, numerous solutions have been proposed. In this research, we focus on multivariate time series (MTS) and devise techniques for high dimensional and voluminous MTS data. The success of such solution techniques relies on effective dimensionality reduction in a preprocessing step. Feature selection has often been used as a dimensionality reduction technique. It helps identify a subset of features that capture most characteristics from the data. We propose a more effective feature subset selection technique, termed Weighted Scores (WS), based on statistics drawn from the Principal Component Analysis (PCA) of the input MTS data matrix. The technique allows reducing the dimensionality of the data, while retaining and ranking its most influential features. We then consider feature grouping and develop a technique termed FRG (Feature Ranking and Grouping) to improve the effectiveness of our technique in sparse vector frameworks. We also developed a PCA based MTS representation technique M2U (Multivariate to Univariate transformation) which allows to transform the MTS with large number of variables to a univariate signal prior to performing downstream pattern recognition tasks such as seeking correlations within the set. In related research, we study the similarity search problem for MTS, and developed a novel correlation based method for standard MTS, ESTMSS (Efficient and Scalable Technique for MTS Similarity Search). For this, we uses randomized dimensionality reduction, and a threshold based correlation computation. The results of our numerous experiments on real benchmark data indicate the effectiveness of our methods. The technique improves computation time by at least an order of magnitude compared to other techniques, and affords a large reduction in memory requirement while providing comparable accuracy and precision results in large scale frameworks

Pyramid: Enhancing Selectivity in Big Data Protection with Count Featurization

Protecting vast quantities of data poses a daunting challenge for the growing number of organizations that collect, stockpile, and monetize it. The ability to distinguish data that is actually needed from data collected "just in case" would help these organizations to limit the latter's exposure to attack. A natural approach might be to monitor data use and retain only the working-set of in-use data in accessible storage; unused data can be evicted to a highly protected store. However, many of today's big data applications rely on machine learning (ML) workloads that are periodically retrained by accessing, and thus exposing to attack, the entire data store. Training set minimization methods, such as count featurization, are often used to limit the data needed to train ML workloads to improve performance or scalability. We present Pyramid, a limited-exposure data management system that builds upon count featurization to enhance data protection. As such, Pyramid uniquely introduces both the idea and proof-of-concept for leveraging training set minimization methods to instill rigor and selectivity into big data management. We integrated Pyramid into Spark Velox, a framework for ML-based targeting and personalization. We evaluate it on three applications and show that Pyramid approaches state-of-the-art models while training on less than 1% of the raw data

Quadratic Projection Based Feature Extraction with Its Application to Biometric Recognition

This paper presents a novel quadratic projection based feature extraction framework, where a set of quadratic matrices is learned to distinguish each class from all other classes. We formulate quadratic matrix learning (QML) as a standard semidefinite programming (SDP) problem. However, the con- ventional interior-point SDP solvers do not scale well to the problem of QML for high-dimensional data. To solve the scalability of QML, we develop an efficient algorithm, termed DualQML, based on the Lagrange duality theory, to extract nonlinear features. To evaluate the feasibility and effectiveness of the proposed framework, we conduct extensive experiments on biometric recognition. Experimental results on three representative biometric recogni- tion tasks, including face, palmprint, and ear recognition, demonstrate the superiority of the DualQML-based feature extraction algorithm compared to the current state-of-the-art algorithm

Machine Learning and Integrative Analysis of Biomedical Big Data.

Recent developments in high-throughput technologies have accelerated the accumulation of massive amounts of omics data from multiple sources: genome, epigenome, transcriptome, proteome, metabolome, etc. Traditionally, data from each source (e.g., genome) is analyzed in isolation using statistical and machine learning (ML) methods. Integrative analysis of multi-omics and clinical data is key to new biomedical discoveries and advancements in precision medicine. However, data integration poses new computational challenges as well as exacerbates the ones associated with single-omics studies. Specialized computational approaches are required to effectively and efficiently perform integrative analysis of biomedical data acquired from diverse modalities. In this review, we discuss state-of-the-art ML-based approaches for tackling five specific computational challenges associated with integrative analysis: curse of dimensionality, data heterogeneity, missing data, class imbalance and scalability issues

Hyperspectral colon tissue cell classification

A novel algorithm to discriminate between normal and malignant tissue cells of the human colon is presented. The microscopic level images of human colon tissue cells were acquired using hyperspectral imaging technology at contiguous wavelength intervals of visible light. While hyperspectral imagery data provides a wealth of information, its large size normally means high computational processing complexity. Several methods exist to avoid the so-called curse of dimensionality and hence reduce the computational complexity. In this study, we experimented with Principal Component Analysis (PCA) and two modifications of Independent Component Analysis (ICA). In the first stage of the algorithm, the extracted components are used to separate four constituent parts of the colon tissue: nuclei, cytoplasm, lamina propria, and lumen. The segmentation is performed in an unsupervised fashion using the nearest centroid clustering algorithm. The segmented image is further used, in the second stage of the classification algorithm, to exploit the spatial relationship between the labeled constituent parts. Experimental results using supervised Support Vector Machines (SVM) classification based on multiscale morphological features reveal the discrimination between normal and malignant tissue cells with a reasonable degree of accuracy

Extracting protein-protein interactions from text using rich feature vectors and feature selection

Because of the intrinsic complexity of natural language, automatically extracting accurate information from text remains a challenge. We have applied rich featurevectors derived from dependency graphs to predict protein-protein interactions using machine learning techniques. We present the first extensive analysis of applyingfeature selection in this domain, and show that it can produce more cost-effective models. For the first time, our technique was also evaluated on several large-scalecross-dataset experiments, which offers a more realistic view on model performance. During benchmarking, we encountered several fundamental problems hindering comparability with other methods. We present a set of practical guidelines to set up ameaningful evaluation. Finally, we have analysed the feature sets from our experiments before and after feature selection, and evaluated the contribution of both lexical and syntacticinformation to our method. The gained insight will be useful to develop better performing methods in this domain

Online Unsupervised Multi-view Feature Selection

In the era of big data, it is becoming common to have data with multiple modalities or coming from multiple sources, known as "multi-view data". Multi-view data are usually unlabeled and come from high-dimensional spaces (such as language vocabularies), unsupervised multi-view feature selection is crucial to many applications. However, it is nontrivial due to the following challenges. First, there are too many instances or the feature dimensionality is too large. Thus, the data may not fit in memory. How to select useful features with limited memory space? Second, how to select features from streaming data and handles the concept drift? Third, how to leverage the consistent and complementary information from different views to improve the feature selection in the situation when the data are too big or come in as streams? To the best of our knowledge, none of the previous works can solve all the challenges simultaneously. In this paper, we propose an Online unsupervised Multi-View Feature Selection, OMVFS, which deals with large-scale/streaming multi-view data in an online fashion. OMVFS embeds unsupervised feature selection into a clustering algorithm via NMF with sparse learning. It further incorporates the graph regularization to preserve the local structure information and help select discriminative features. Instead of storing all the historical data, OMVFS processes the multi-view data chunk by chunk and aggregates all the necessary information into several small matrices. By using the buffering technique, the proposed OMVFS can reduce the computational and storage cost while taking advantage of the structure information. Furthermore, OMVFS can capture the concept drifts in the data streams. Extensive experiments on four real-world datasets show the effectiveness and efficiency of the proposed OMVFS method. More importantly, OMVFS is about 100 times faster than the off-line methods