Performing high-level synthesis via program transformations within a theorem prover

In this paper, we present a new methodology towards performing high-level synthesis. During high-level synthesis an algorithmic description is mapped to a structure of hardware components. In our approach, high-level synthesis is performed via program transformations. All transformations are performed within a higher order logic theorem prover thus guaranteeing correctness. Our approach is not restricted to data flow graphs but supports arbitrary computable functions, i.e. mixed control/data flow graphs. Furthermore, the treatment of algorithmic and interface descriptions is orthogonalised, allowing systematic reuse of designs

Automata - a theory dedicated towards formal circuit synthesis

This is a technical report about a theory named Automata. Automata is an arithmetic for synchronous circuits. It provides means for representing and transforming circuit descriptions at the RT level and gate level in a mathemtical manner. Automata has been implemented in the HOL theorem proving environment. Preproven theorems are designed for performing standard synthesis steps such as state encoding, retiming and state minimization in a mathematical manner via logical derivation

Power and memory optimization techniques in embedded systems design

Embedded systems incur tight constraints on power consumption and memory (which impacts size) in addition to other constraints such as weight and cost. This dissertation addresses two key factors in embedded system design, namely minimization of power consumption and memory requirement. The first part of this dissertation considers the problem of optimizing power consumption (peak power as well as average power) in high-level synthesis (HLS). The second part deals with memory usage optimization mainly targeting a restricted class of computations expressed as loops accessing large data arrays that arises in scientific computing such as the coupled cluster and configuration interaction methods in quantum chemistry. First, a mixed-integer linear programming (MILP) formulation is presented for the scheduling problem in HLS using multiple supply-voltages in order to optimize peak power as well as average power and energy consumptions. For large designs, the MILP formulation may not be suitable; therefore, a two-phase iterative linear programming formulation and a power-resource-saving heuristic are presented to solve this problem. In addition, a new heuristic that uses an adaptation of the well-known force-directed scheduling heuristic is presented for the same problem. Next, this work considers the problem of module selection simultaneously with scheduling for minimizing peak and average power consumption. Then, the problem of power consumption (peak and average) in synchronous sequential designs is addressed. A solution integrating basic retiming and multiple-voltage scheduling (MVS) is proposed and evaluated. A two-stage algorithm namely power-oriented retiming followed by a MVS technique for peak and/or average power optimization is presented. Memory optimization is addressed next. Dynamic memory usage optimization during the evaluation of a special class of interdependent large data arrays is considered. Finally, this dissertation develops a novel integer-linear programming (ILP) formulation for static memory optimization using the well-known fusion technique by encoding of legality rules for loop fusion of a special class of loops using logical constraints over binary decision variables and a highly effective approximation of memory usage

Fast algorithms for retiming large digital circuits

The increasing complexity of VLSI systems and shrinking time to market requirements demand good optimization tools capable of handling large circuits. Retiming is a powerful transformation that preserves functionality, and can be used to optimize sequential circuits for a wide range of objective functions by judiciously relocating the memory elements. Leiserson and Saxe, who introduced the concept, presented algorithms for period optimization (minperiod retiming) and area optimization (minarea retiming). The ASTRA algorithm proposed an alternative view of retiming using the equivalence between retiming and clock skew optimization;The first part of this thesis defines the relationship between the Leiserson-Saxe and the ASTRA approaches and utilizes it for efficient minarea retiming of large circuits. The new algorithm, Minaret, uses the same linear program formulation as the Leiserson-Saxe approach. The underlying philosophy of the ASTRA approach is incorporated to reduce the number of variables and constraints in this linear program. This allows minarea retiming of circuits with over 56,000 gates in under fifteen minutes;The movement of flip-flops in control logic changes the state encoding of finite state machines, requiring the preservation of initial (reset) states. In the next part of this work the problem of minimizing the number of flip-flops in control logic subject to a specified clock period and with the guarantee of an equivalent initial state, is formulated as a mixed integer linear program. Bounds on the retiming variables are used to guarantee an equivalent initial state in the retimed circuit. These bounds lead to a simple method for calculating an equivalent initial state for the retimed circuit;The transparent nature of level sensitive latches enables level-clocked circuits to operate faster and require less area. However, this transparency makes the operation of level-clocked circuits very complex, and optimization of level-clocked circuits is a difficult task. This thesis also presents efficient algorithms for retiming large level-clocked circuits. The relationship between retiming and clock skew optimization for level-clocked circuits is defined and utilized to develop efficient retiming algorithms for period and area optimization. Using these algorithms a circuit with 56,000 gates could be retimed for minimum period in under twenty seconds and for minimum area in under 1.5 hours

Parallelization of dynamic programming recurrences in computational biology

The rapid growth of biosequence databases over the last decade has led to a performance bottleneck in the applications analyzing them. In particular, over the last five years DNA sequencing capacity of next-generation sequencers has been doubling every six months as costs have plummeted. The data produced by these sequencers is overwhelming traditional compute systems. We believe that in the future compute performance, not sequencing, will become the bottleneck in advancing genome science. In this work, we investigate novel computing platforms to accelerate dynamic programming algorithms, which are popular in bioinformatics workloads. We study algorithm-specific hardware architectures that exploit fine-grained parallelism in dynamic programming kernels using field-programmable gate arrays: FPGAs). We advocate a high-level synthesis approach, using the recurrence equation abstraction to represent dynamic programming and polyhedral analysis to exploit parallelism. We suggest a novel technique within the polyhedral model to optimize for throughput by pipelining independent computations on an array. This design technique improves on the state of the art, which builds latency-optimal arrays. We also suggest a method to dynamically switch between a family of designs using FPGA reconfiguration to achieve a significant performance boost. We have used polyhedral methods to parallelize the Nussinov RNA folding algorithm to build a family of accelerators that can trade resources for parallelism and are between 15-130x faster than a modern dual core CPU implementation. A Zuker RNA folding accelerator we built on a single workstation with four Xilinx Virtex 4 FPGAs outperforms 198 3 GHz Intel Core 2 Duo processors. Furthermore, our design running on a single FPGA is an order of magnitude faster than competing implementations on similar-generation FPGAs and graphics processors. Our work is a step toward the goal of automated synthesis of hardware accelerators for dynamic programming algorithms

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Tohoku University青木孝文課