Single-tree detection in high-density LiDAR data from UAV-based survey

UAV-based LiDAR survey provides very-high-density point clouds, which involve very rich information about forest detailed structure, allowing for detection of individual trees, as well as demanding high computational load. Single-tree detection is of great interest for forest management and ecology purposes, and the task is relatively well solved for forests made of single or largely dominant species, and trees having a very evident pointed shape in the upper part of the canopy (in particular conifers). Most authors proposed methods based totally or partially on search of local maxima in the canopy, which has poor performance for species that have flat or irregular upper canopy, and for mixed forests, especially where taller trees hide smaller ones. Such considerations apply in particular to Mediterranean hardwood forests. In such context, it is imperative to use the whole volume of the point cloud, however keeping computational load tractable. The authors propose the use of a methodology based on modelling the 3D-shape of the tree, which improves performance w.r.t to maxima-based models. A case study, performed on a hazel grove, is provided to document performance improvement on a relatively simple, but significant, case

Saliency-guided integration of multiple scans

we present a novel method..

Segmentation, Reconstruction, and Analysis of Blood Thrombus Formation in 3D 2-Photon Microscopy Images

We study the problem of segmenting, reconstructing, and analyzing the structure growth of thrombi (clots) in blood vessels in vivo based on 2-photon microscopic image data. First, we develop an algorithm for segmenting clots in 3D microscopic images based on density-based clustering and methods for dealing with imaging artifacts. Next, we apply the union-of-balls (or alpha-shape) algorithm to reconstruct the boundary of clots in 3D. Finally, we perform experimental studies and analysis on the reconstructed clots and obtain quantitative data of thrombus growth and structures. We conduct experiments on laser-induced injuries in vessels of two types of mice (the wild type and the type with low levels of coagulation factor VII) and analyze and compare the developing clot structures based on their reconstructed clots from image data. The results we obtain are of biomedical significance. Our quantitative analysis of the clot composition leads to better understanding of the thrombus development, and is valuable to the modeling and verification of computational simulation of thrombogenesis

Classification of airborne laser scanning point clouds based on binomial logistic regression analysis

This article presents a newly developed procedure for the classification of airborne laser scanning (ALS) point clouds, based on binomial logistic regression analysis. By using a feature space containing a large number of adaptable geometrical parameters, this new procedure can be applied to point clouds covering different types of topography and variable point densities. Besides, the procedure can be adapted to different user requirements. A binomial logistic model is estimated for all a priori defined classes, using a training set of manually classified points. For each point, a value is calculated defining the probability that this point belongs to a certain class. The class with the highest probability will be used for the final point classification. Besides, the use of statistical methods enables a thorough model evaluation by the implementation of well-founded inference criteria. If necessary, the interpretation of these inference analyses also enables the possible definition of more sub-classes. The use of a large number of geometrical parameters is an important advantage of this procedure in comparison with current classification algorithms. It allows more user modifications for the large variety of types of ALS point clouds, while still achieving comparable classification results. It is indeed possible to evaluate parameters as degrees of freedom and remove or add parameters as a function of the type of study area. The performance of this procedure is successfully demonstrated by classifying two different ALS point sets from an urban and a rural area. Moreover, the potential of the proposed classification procedure is explored for terrestrial data

SqueezeSeg: Convolutional Neural Nets with Recurrent CRF for Real-Time Road-Object Segmentation from 3D LiDAR Point Cloud

In this paper, we address semantic segmentation of road-objects from 3D LiDAR point clouds. In particular, we wish to detect and categorize instances of interest, such as cars, pedestrians and cyclists. We formulate this problem as a point- wise classification problem, and propose an end-to-end pipeline called SqueezeSeg based on convolutional neural networks (CNN): the CNN takes a transformed LiDAR point cloud as input and directly outputs a point-wise label map, which is then refined by a conditional random field (CRF) implemented as a recurrent layer. Instance-level labels are then obtained by conventional clustering algorithms. Our CNN model is trained on LiDAR point clouds from the KITTI dataset, and our point-wise segmentation labels are derived from 3D bounding boxes from KITTI. To obtain extra training data, we built a LiDAR simulator into Grand Theft Auto V (GTA-V), a popular video game, to synthesize large amounts of realistic training data. Our experiments show that SqueezeSeg achieves high accuracy with astonishingly fast and stable runtime (8.7 ms per frame), highly desirable for autonomous driving applications. Furthermore, additionally training on synthesized data boosts validation accuracy on real-world data. Our source code and synthesized data will be open-sourced