Robust Dropping Criteria for F-norm Minimization Based Sparse Approximate Inverse Preconditioning

Dropping tolerance criteria play a central role in Sparse Approximate Inverse preconditioning. Such criteria have received, however, little attention and have been treated heuristically in the following manner: If the size of an entry is below some empirically small positive quantity, then it is set to zero. The meaning of "small" is vague and has not been considered rigorously. It has not been clear how dropping tolerances affect the quality and effectiveness of a preconditioner $M$. In this paper, we focus on the adaptive Power Sparse Approximate Inverse algorithm and establish a mathematical theory on robust selection criteria for dropping tolerances. Using the theory, we derive an adaptive dropping criterion that is used to drop entries of small magnitude dynamically during the setup process of $M$. The proposed criterion enables us to make $M$ both as sparse as possible as well as to be of comparable quality to the potentially denser matrix which is obtained without dropping. As a byproduct, the theory applies to static F-norm minimization based preconditioning procedures, and a similar dropping criterion is given that can be used to sparsify a matrix after it has been computed by a static sparse approximate inverse procedure. In contrast to the adaptive procedure, dropping in the static procedure does not reduce the setup time of the matrix but makes the application of the sparser $M$ for Krylov iterations cheaper. Numerical experiments reported confirm the theory and illustrate the robustness and effectiveness of the dropping criteria.Comment: 27 pages, 2 figure

Effective partitioning method for computing weighted Moore-Penrose inverse

We introduce a method and an algorithm for computing the weighted Moore-Penrose inverse of multiple-variable polynomial matrix and the related algorithm which is appropriated for sparse polynomial matrices. These methods and algorithms are generalizations of algorithms developed in [M.B. Tasic, P.S. Stanimirovic, M.D. Petkovic, Symbolic computation of weighted Moore-Penrose inverse using partitioning method, Appl. Math. Comput. 189 (2007) 615-640] to multiple-variable rational and polynomial matrices and improvements of these algorithms on sparse matrices. Also, these methods are generalizations of the partitioning method for computing the Moore-Penrose inverse of rational and polynomial matrices introduced in [P.S. Stanimirovic, M.B. Tasic, Partitioning method for rational and polynomial matrices, Appl. Math. Comput. 155 (2004) 137-163; M.D. Petkovic, P.S. Stanimirovic, Symbolic computation of the Moore-Penrose inverse using partitioning method, Internat. J. Comput. Math. 82 (2005) 355-367] to the case of weighted Moore-Penrose inverse. Algorithms are implemented in the symbolic computational package MATHEMATICA

Composing and Factoring Generalized Green's Operators and Ordinary Boundary Problems

We consider solution operators of linear ordinary boundary problems with "too many" boundary conditions, which are not always solvable. These generalized Green's operators are a certain kind of generalized inverses of differential operators. We answer the question when the product of two generalized Green's operators is again a generalized Green's operator for the product of the corresponding differential operators and which boundary problem it solves. Moreover, we show that---provided a factorization of the underlying differential operator---a generalized boundary problem can be factored into lower order problems corresponding to a factorization of the respective Green's operators. We illustrate our results by examples using the Maple package IntDiffOp, where the presented algorithms are implemented.Comment: 19 page

Representations and symbolic computation of generalized inverses over fields

This paper investigates representations of outer matrix inverses with prescribed range and/or none space in terms of inner inverses. Further, required inner inverses are computed as solutions of appropriate linear matrix equations (LME). In this way, algorithms for computing outer inverses are derived using solutions of appropriately defined LME. Using symbolic solutions to these matrix equations it is possible to derive corresponding algorithms in appropriate computer algebra systems. In addition, we give sufficient conditions to ensure the proper specialization of the presented representations. As a consequence, we derive algorithms to deal with outer inverses with prescribed range and/or none space and with meromorphic functional entries.Agencia Estatal de investigaciónUniversidad de Alcal

Application-tailored Linear Algebra Algorithms: A search-based Approach

In this paper, we tackle the problem of automatically generating algorithms for linear algebra operations by taking advantage of problem-specific knowledge. In most situations, users possess much more information about the problem at hand than what current libraries and computing environments accept; evidence shows that if properly exploited, such information leads to uncommon/unexpected speedups. We introduce a knowledge-aware linear algebra compiler that allows users to input matrix equations together with properties about the operands and the problem itself; for instance, they can specify that the equation is part of a sequence, and how successive instances are related to one another. The compiler exploits all this information to guide the generation of algorithms, to limit the size of the search space, and to avoid redundant computations. We applied the compiler to equations arising as part of sensitivity and genome studies; the algorithms produced exhibit, respectively, 100- and 1000-fold speedups