Recent Advances in Graph Partitioning

We survey recent trends in practical algorithms for balanced graph partitioning together with applications and future research directions

Combining spectral sequencing and parallel simulated annealing for the MinLA problem

In this paper we present and analyze new sequential and parallel heuristics to approximate the Minimum Linear Arrangement problem (MinLA). The heuristics consist in obtaining a first global solution using Spectral Sequencing and improving it locally through Simulated Annealing. In order to accelerate the annealing process, we present a special neighborhood distribution that tends to favor moves with high probability to be accepted. We show how to make use of this neighborhood to parallelize the Metropolis stage on distributed memory machines by mapping partitions of the input graph to processors and performing moves concurrently. The paper reports the results obtained with this new heuristic when applied to a set of large graphs, including graphs arising from finite elements methods and graphs arising from VLSI applications. Compared to other heuristics, the measurements obtained show that the new heuristic improves the solution quality, decreases the running time and offers an excellent speedup when ran on a commodity network made of nine personal computers.Postprint (published version

Frequency and voltage partitioning in presence of renewable energy resources for power system (example: North Chile power network)

This paper investigates techniques for frequency and voltage partitioning of power network based on the graph-theory. These methods divide the power system into distinguished regions to avoid the spread of disturbances and to minimize the interaction between these regions for frequency and voltage control of power system. In case of required active and reactive power for improving the performance of the power system, control can be performed regionally instead of a centralized controller. In this paper, renewable energy sources are connected to the power network to verify the effect of these sources on the power systems partitioning and performance. The number of regions is found based on the frequency sensitivity for frequency partitioning and bus voltage for voltage partitioning to disturbances being applied to loads in each region. The methodology is applied to the north part of Chile power network. The results show the performance and ability of graph frequency and voltage partitioning algorithm to divide large scale power systems to smaller regions for applying decentralized controllers.Peer ReviewedPostprint (published version

Community Detection via Maximization of Modularity and Its Variants

In this paper, we first discuss the definition of modularity (Q) used as a metric for community quality and then we review the modularity maximization approaches which were used for community detection in the last decade. Then, we discuss two opposite yet coexisting problems of modularity optimization: in some cases, it tends to favor small communities over large ones while in others, large communities over small ones (so called the resolution limit problem). Next, we overview several community quality metrics proposed to solve the resolution limit problem and discuss Modularity Density (Qds) which simultaneously avoids the two problems of modularity. Finally, we introduce two novel fine-tuned community detection algorithms that iteratively attempt to improve the community quality measurements by splitting and merging the given network community structure. The first of them, referred to as Fine-tuned Q, is based on modularity (Q) while the second one is based on Modularity Density (Qds) and denoted as Fine-tuned Qds. Then, we compare the greedy algorithm of modularity maximization (denoted as Greedy Q), Fine-tuned Q, and Fine-tuned Qds on four real networks, and also on the classical clique network and the LFR benchmark networks, each of which is instantiated by a wide range of parameters. The results indicate that Fine-tuned Qds is the most effective among the three algorithms discussed. Moreover, we show that Fine-tuned Qds can be applied to the communities detected by other algorithms to significantly improve their results

Algorithmic and Statistical Perspectives on Large-Scale Data Analysis

In recent years, ideas from statistics and scientific computing have begun to interact in increasingly sophisticated and fruitful ways with ideas from computer science and the theory of algorithms to aid in the development of improved worst-case algorithms that are useful for large-scale scientific and Internet data analysis problems. In this chapter, I will describe two recent examples---one having to do with selecting good columns or features from a (DNA Single Nucleotide Polymorphism) data matrix, and the other having to do with selecting good clusters or communities from a data graph (representing a social or information network)---that drew on ideas from both areas and that may serve as a model for exploiting complementary algorithmic and statistical perspectives in order to solve applied large-scale data analysis problems.Comment: 33 pages. To appear in Uwe Naumann and Olaf Schenk, editors, "Combinatorial Scientific Computing," Chapman and Hall/CRC Press, 201

Post-Processing Hierarchical Community Structures: Quality Improvements and Multi-scale View

Dense sub-graphs of sparse graphs (communities), which appear in most real-world complex networks, play an important role in many contexts. Most existing community detection algorithms produce a hierarchical structure of community and seek a partition into communities that optimizes a given quality function. We propose new methods to improve the results of any of these algorithms. First we show how to optimize a general class of additive quality functions (containing the modularity, the performance, and a new similarity based quality function we propose) over a larger set of partitions than the classical methods. Moreover, we define new multi-scale quality functions which make it possible to detect the different scales at which meaningful community structures appear, while classical approaches find only one partition.Comment: 12 Pages, 4 figure