111,269 research outputs found
Social-sparsity brain decoders: faster spatial sparsity
Spatially-sparse predictors are good models for brain decoding: they give
accurate predictions and their weight maps are interpretable as they focus on a
small number of regions. However, the state of the art, based on total
variation or graph-net, is computationally costly. Here we introduce sparsity
in the local neighborhood of each voxel with social-sparsity, a structured
shrinkage operator. We find that, on brain imaging classification problems,
social-sparsity performs almost as well as total-variation models and better
than graph-net, for a fraction of the computational cost. It also very clearly
outlines predictive regions. We give details of the model and the algorithm.Comment: in Pattern Recognition in NeuroImaging, Jun 2016, Trento, Italy. 201
Feature Engineering for Predictive Modeling using Reinforcement Learning
Feature engineering is a crucial step in the process of predictive modeling.
It involves the transformation of given feature space, typically using
mathematical functions, with the objective of reducing the modeling error for a
given target. However, there is no well-defined basis for performing effective
feature engineering. It involves domain knowledge, intuition, and most of all,
a lengthy process of trial and error. The human attention involved in
overseeing this process significantly influences the cost of model generation.
We present a new framework to automate feature engineering. It is based on
performance driven exploration of a transformation graph, which systematically
and compactly enumerates the space of given options. A highly efficient
exploration strategy is derived through reinforcement learning on past
examples
Histopathological image analysis : a review
Over the past decade, dramatic increases in computational power and improvement in image analysis algorithms have allowed the development of powerful computer-assisted analytical approaches to radiological data. With the recent advent of whole slide digital scanners, tissue histopathology slides can now be digitized and stored in digital image form. Consequently, digitized tissue histopathology has now become amenable to the application of computerized image analysis and machine learning techniques. Analogous to the role of computer-assisted diagnosis (CAD) algorithms in medical imaging to complement the opinion of a radiologist, CAD algorithms have begun to be developed for disease detection, diagnosis, and prognosis prediction to complement the opinion of the pathologist. In this paper, we review the recent state of the art CAD technology for digitized histopathology. This paper also briefly describes the development and application of novel image analysis technology for a few specific histopathology related problems being pursued in the United States and Europe
Spatially Aware Dictionary Learning and Coding for Fossil Pollen Identification
We propose a robust approach for performing automatic species-level
recognition of fossil pollen grains in microscopy images that exploits both
global shape and local texture characteristics in a patch-based matching
methodology. We introduce a novel criteria for selecting meaningful and
discriminative exemplar patches. We optimize this function during training
using a greedy submodular function optimization framework that gives a
near-optimal solution with bounded approximation error. We use these selected
exemplars as a dictionary basis and propose a spatially-aware sparse coding
method to match testing images for identification while maintaining global
shape correspondence. To accelerate the coding process for fast matching, we
introduce a relaxed form that uses spatially-aware soft-thresholding during
coding. Finally, we carry out an experimental study that demonstrates the
effectiveness and efficiency of our exemplar selection and classification
mechanisms, achieving accuracy on a difficult fine-grained species
classification task distinguishing three types of fossil spruce pollen.Comment: CVMI 201
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