Context–aware Learning for Generative Models

This work studies the class of algorithms for learning with side-information that emerges by extending generative models with embedded context-related variables. Using finite mixture models (FMMs) as the prototypical Bayesian network, we show that maximum-likelihood estimation (MLE) of parameters through expectation-maximization (EM) improves over the regular unsupervised case and can approach the performances of supervised learning, despite the absence of any explicit ground-truth data labeling. By direct application of the missing information principle (MIP), the algorithms' performances are proven to range between the conventional supervised and unsupervised MLE extremities proportionally to the information content of the contextual assistance provided. The acquired benefits regard higher estimation precision, smaller standard errors, faster convergence rates, and improved classification accuracy or regression fitness shown in various scenarios while also highlighting important properties and differences among the outlined situations. Applicability is showcased with three real-world unsupervised classification scenarios employing Gaussian mixture models. Importantly, we exemplify the natural extension of this methodology to any type of generative model by deriving an equivalent context-aware algorithm for variational autoencoders (VAs), thus broadening the spectrum of applicability to unsupervised deep learning with artificial neural networks. The latter is contrasted with a neural-symbolic algorithm exploiting side information

Neural activity classification with machine learning models trained on interspike interval series data

The flow of information through the brain is reflected by the activity patterns of neural cells. Indeed, these firing patterns are widely used as input data to predictive models that relate stimuli and animal behavior to the activity of a population of neurons. However, relatively little attention was paid to single neuron spike trains as predictors of cell or network properties in the brain. In this work, we introduce an approach to neuronal spike train data mining which enables effective classification and clustering of neuron types and network activity states based on single-cell spiking patterns. This approach is centered around applying state-of-the-art time series classification/clustering methods to sequences of interspike intervals recorded from single neurons. We demonstrate good performance of these methods in tasks involving classification of neuron type (e.g. excitatory vs. inhibitory cells) and/or neural circuit activity state (e.g. awake vs. REM sleep vs. nonREM sleep states) on an open-access cortical spiking activity dataset

Learning and reasoning with graph data

Reasoning about graphs, and learning from graph data is a field of artificial intelligence that has recently received much attention in the machine learning areas of graph representation learning and graph neural networks. Graphs are also the underlying structures of interest in a wide range of more traditional fields ranging from logic-oriented knowledge representation and reasoning to graph kernels and statistical relational learning. In this review we outline a broad map and inventory of the field of learning and reasoning with graphs that spans the spectrum from reasoning in the form of logical deduction to learning node embeddings. To obtain a unified perspective on such a diverse landscape we introduce a simple and general semantic concept of a model that covers logic knowledge bases, graph neural networks, kernel support vector machines, and many other types of frameworks. Still at a high semantic level, we survey common strategies for model specification using probabilistic factorization and standard feature construction techniques. Based on this semantic foundation we introduce a taxonomy of reasoning tasks that casts problems ranging from transductive link prediction to asymptotic analysis of random graph models as queries of different complexities for a given model. Similarly, we express learning in different frameworks and settings in terms of a common statistical maximum likelihood principle. Overall, this review aims to provide a coherent conceptual framework that provides a basis for further theoretical analyses of respective strengths and limitations of different approaches to handling graph data, and that facilitates combination and integration of different modeling paradigms

Mining Predictive Patterns and Extension to Multivariate Temporal Data

An important goal of knowledge discovery is the search for patterns in the data that can help explaining its underlying structure. To be practically useful, the discovered patterns should be novel (unexpected) and easy to understand by humans. In this thesis, we study the problem of mining patterns (defining subpopulations of data instances) that are important for predicting and explaining a specific outcome variable. An example is the task of identifying groups of patients that respond better to a certain treatment than the rest of the patients. We propose and present efficient methods for mining predictive patterns for both atemporal and temporal (time series) data. Our first method relies on frequent pattern mining to explore the search space. It applies a novel evaluation technique for extracting a small set of frequent patterns that are highly predictive and have low redundancy. We show the benefits of this method on several synthetic and public datasets. Our temporal pattern mining method works on complex multivariate temporal data, such as electronic health records, for the event detection task. It first converts time series into time-interval sequences of temporal abstractions and then mines temporal patterns backwards in time, starting from patterns related to the most recent observations. We show the benefits of our temporal pattern mining method on two real-world clinical tasks

PROTOtypical Logic Tensor Networks (PROTO-LTN) for Zero Shot Learning

Semantic image interpretation can vastly benefit from approaches that combine sub-symbolic distributed representation learning with the capability to reason at a higher level of abstraction. Logic Tensor Networks (LTNs) are a class of neuro-symbolic systems based on a differentiable, first-order logic grounded into a deep neural network. LTNs replace the classical concept of training set with a knowledge base of fuzzy logical axioms. By defining a set of differentiable operators to approximate the role of connectives, predicates, functions and quantifiers, a loss function is automatically specified so that LTNs can learn to satisfy the knowledge base. We focus here on the subsumption or isOfClass predicate, which is fundamental to encode most semantic image interpretation tasks. Unlike conventional LTNs, which rely on a separate predicate for each class (e.g., dog, cat), each with its own set of learnable weights, we propose a common isOfClass predicate, whose level of truth is a function of the distance between an object embedding and the corresponding class prototype. The PROTOtypical Logic Tensor Networks (PROTO-LTN) extend the current formulation by grounding abstract concepts as parametrized class prototypes in a high-dimensional embedding space, while reducing the number of parameters required to ground the knowledge base. We show how this architecture can be effectively trained in the few and zero-shot learning scenarios. Experiments on Generalized Zero Shot Learning benchmarks validate the proposed implementation as a competitive alternative to traditional embedding-based approaches. The proposed formulation opens up new opportunities in zero shot learning settings, as the LTN formalism allows to integrate background knowledge in the form of logical axioms to compensate for the lack of labelled examples