Autonomic State Management for Optimistic Simulation Platforms

We present the design and implementation of an autonomic state manager (ASM) tailored for integration within optimistic parallel discrete event simulation (PDES) environments based on the C programming language and the executable and linkable format (ELF), and developed for execution on x8664 architectures. With ASM, the state of any logical process (LP), namely the individual (concurrent) simulation unit being part of the simulation model, is allowed to be scattered on dynamically allocated memory chunks managed via standard API (e.g., malloc/free). Also, the application programmer is not required to provide any serialization/deserialization module in order to take a checkpoint of the LP state, or to restore it in case a causality error occurs during the optimistic run, or to provide indications on which portions of the state are updated by event processing, so to allow incremental checkpointing. All these tasks are handled by ASM in a fully transparent manner via (A) runtime identification (with chunk-level granularity) of the memory map associated with the LP state, and (B) runtime tracking of the memory updates occurring within chunks belonging to the dynamic memory map. The co-existence of the incremental and non-incremental log/restore modes is achieved via dual versions of the same application code, transparently generated by ASM via compile/link time facilities. Also, the dynamic selection of the best suited log/restore mode is actuated by ASM on the basis of an innovative modeling/optimization approach which takes into account stability of each operating mode with respect to variations of the model/environmental execution parameters

Optimizing simulation on shared-memory platforms: The smart cities case

Modern advancements in computing architectures have been accompanied by new emergent paradigms to run Parallel Discrete Event Simulation models efficiently. Indeed, many new paradigms to effectively use the available underlying hardware have been proposed in the literature. Among these, the Share-Everything paradigm tackles massively-parallel shared-memory machines, in order to support speculative simulation by taking into account the limits and benefits related to this family of architectures. Previous results have shown how this paradigm outperforms traditional speculative strategies (such as data-separated Time Warp systems) whenever the granularity of executed events is small. In this paper, we show performance implications of this simulation-engine organization when the simulation models have a variable granularity. To this end, we have selected a traffic model, tailored for smart cities-oriented simulation. Our assessment illustrates the effects of the various tuning parameters related to the approach, opening to a higher understanding of this innovative paradigm

Revisiting Actor Programming in C++

The actor model of computation has gained significant popularity over the last decade. Its high level of abstraction makes it appealing for concurrent applications in parallel and distributed systems. However, designing a real-world actor framework that subsumes full scalability, strong reliability, and high resource efficiency requires many conceptual and algorithmic additives to the original model. In this paper, we report on designing and building CAF, the "C++ Actor Framework". CAF targets at providing a concurrent and distributed native environment for scaling up to very large, high-performance applications, and equally well down to small constrained systems. We present the key specifications and design concepts---in particular a message-transparent architecture, type-safe message interfaces, and pattern matching facilities---that make native actors a viable approach for many robust, elastic, and highly distributed developments. We demonstrate the feasibility of CAF in three scenarios: first for elastic, upscaling environments, second for including heterogeneous hardware like GPGPUs, and third for distributed runtime systems. Extensive performance evaluations indicate ideal runtime behaviour for up to 64 cores at very low memory footprint, or in the presence of GPUs. In these tests, CAF continuously outperforms the competing actor environments Erlang, Charm++, SalsaLite, Scala, ActorFoundry, and even the OpenMPI.Comment: 33 page

A fine-grain time-sharing Time Warp system

Although Parallel Discrete Event Simulation (PDES) platforms relying on the Time Warp (optimistic) synchronization protocol already allow for exploiting parallelism, several techniques have been proposed to further favor performance. Among them we can mention optimized approaches for state restore, as well as techniques for load balancing or (dynamically) controlling the speculation degree, the latter being specifically targeted at reducing the incidence of causality errors leading to waste of computation. However, in state of the art Time Warp systems, events’ processing is not preemptable, which may prevent the possibility to promptly react to the injection of higher priority (say lower timestamp) events. Delaying the processing of these events may, in turn, give rise to higher incidence of incorrect speculation. In this article we present the design and realization of a fine-grain time-sharing Time Warp system, to be run on multi-core Linux machines, which makes systematic use of event preemption in order to dynamically reassign the CPU to higher priority events/tasks. Our proposal is based on a truly dual mode execution, application vs platform, which includes a timer-interrupt based support for bringing control back to platform mode for possible CPU reassignment according to very fine grain periods. The latter facility is offered by an ad-hoc timer-interrupt management module for Linux, which we release, together with the overall time-sharing support, within the open source ROOT-Sim platform. An experimental assessment based on the classical PHOLD benchmark and two real world models is presented, which shows how our proposal effectively leads to the reduction of the incidence of causality errors, as compared to traditional Time Warp, especially when running with higher degrees of parallelism

Leveraging Non-Volatile Memory in Modern Storage Management Architectures

Non-volatile memory technologies (NVM) introduce a novel class of devices that combine characteristics of both storage and main memory. Like storage, NVM is not only persistent, but also denser and cheaper than DRAM. Like DRAM, NVM is byte-addressable and has lower access latency. In recent years, NVM has gained a lot of attention both in academia and in the data management industry, with views ranging from skepticism to over excitement. Some critics claim that NVM is not cheap enough to replace flash-based SSDs nor is it fast enough to replace DRAM, while others see it simply as a storage device. Supporters of NVM have observed that its low latency and byte-addressability requires radical changes and a complete rewrite of storage management architectures. This thesis takes a moderate stance between these two views. We consider that, while NVM might not replace flash-based SSD or DRAM in the near future, it has the potential to reduce the gap between them. Furthermore, treating NVM as a regular storage media does not fully leverage its byte-addressability and low latency. On the other hand, completely redesigning systems to be NVM-centric is impractical. Proposals that attempt to leverage NVM to simplify storage management result in completely new architectures that face the same challenges that are already well-understood and addressed by the traditional architectures. Therefore, we take three common storage management architectures as a starting point, and propose incremental changes to enable them to better leverage NVM. First, in the context of log-structured merge-trees, we investigate the impact of storing data in NVM, and devise methods to enable small granularity accesses and NVM-aware caching policies. Second, in the context of B+Trees, we propose to extend the buffer pool and describe a technique based on the concept of optimistic consistency to handle corrupted pages in NVM. Third, we employ NVM to enable larger capacity and reduced costs in a index+log key-value store, and combine it with other techniques to build a system that achieves low tail latency. This thesis aims to describe and evaluate these techniques in order to enable storage management architectures to leverage NVM and achieve increased performance and lower costs, without major architectural changes.:1 Introduction 1.1 Non-Volatile Memory 1.2 Challenges 1.3 Non-Volatile Memory & Database Systems 1.4 Contributions and Outline 2 Background 2.1 Non-Volatile Memory 2.1.1 Types of NVM 2.1.2 Access Modes 2.1.3 Byte-addressability and Persistency 2.1.4 Performance 2.2 Related Work 2.3 Case Study: Persistent Tree Structures 2.3.1 Persistent Trees 2.3.2 Evaluation 3 Log-Structured Merge-Trees 3.1 LSM and NVM 3.2 LSM Architecture 3.2.1 LevelDB 3.3 Persistent Memory Environment 3.4 2Q Cache Policy for NVM 3.5 Evaluation 3.5.1 Write Performance 3.5.2 Read Performance 3.5.3 Mixed Workloads 3.6 Additional Case Study: RocksDB 3.6.1 Evaluation 4 B+Trees 4.1 B+Tree and NVM 4.1.1 Category #1: Buffer Extension 4.1.2 Category #2: DRAM Buffered Access 4.1.3 Category #3: Persistent Trees 4.2 Persistent Buffer Pool with Optimistic Consistency 4.2.1 Architecture and Assumptions 4.2.2 Embracing Corruption 4.3 Detecting Corruption 4.3.1 Embracing Corruption 4.4 Repairing Corruptions 4.5 Performance Evaluation and Expectations 4.5.1 Checksums Overhead 4.5.2 Runtime and Recovery 4.6 Discussion 5 Index+Log Key-Value Stores 5.1 The Case for Tail Latency 5.2 Goals and Overview 5.3 Execution Model 5.3.1 Reactive Systems and Actor Model 5.3.2 Message-Passing Communication 5.3.3 Cooperative Multitasking 5.4 Log-Structured Storage 5.5 Networking 5.6 Implementation Details 5.6.1 NVM Allocation on RStore 5.6.2 Log-Structured Storage and Indexing 5.6.3 Garbage Collection 5.6.4 Logging and Recovery 5.7 Systems Operations 5.8 Evaluation 5.8.1 Methodology 5.8.2 Environment 5.8.3 Other Systems 5.8.4 Throughput Scalability 5.8.5 Tail Latency 5.8.6 Scans 5.8.7 Memory Consumption 5.9 Related Work 6 Conclusion Bibliography A PiBenc

NUMA Time Warp

It is well known that Time Warp may suffer from large usage of memory, which may hamper the efficiency of the memory hierarchy. To cope with this issue, several approaches have been devised, mostly based on the reduction of the amount of used virtual memory, e.g., by the avoidance of checkpointing and the exploitation of reverse computing. In this article we present an orthogonal solution aimed at optimizing the latency for memory access operations when running Time Warp systems on Non-Uniform Memory Access (NUMA) multi-processor/multi-core computing systems. More in detail, we provide an innovative Linux-based architecture allowing per simulation-object management of memory segments made up by disjoint sets of pages, and supporting both static and dynamic binding of the memory pages reserved for an individual object to the different NUMA nodes, depending on what worker thread is in charge of running that simulation object along a given wall-clock-time window. Our proposal not only manages the virtual pages used for the live state image of the simulation object, rather, it also copes with memory pages destined to keep the simulation object's event buffers and any recoverability data. Further, the architecture allows memory access optimization for data (messages) exchanged across the different simulation objects running on the NUMA machine. Our proposal is fully transparent to the application code, thus operating in a seamless manner. Also, a free software release of our NUMA memory manager for Time Warp has been made available within the open source ROOT-Sim simulation platform. Experimental data for an assessment of our innovative proposal are also provided in this article

An Agent-Based Simulation API for Speculative PDES Runtime Environments

Agent-Based Modeling and Simulation (ABMS) is an effective paradigm to model systems exhibiting complex interactions, also with the goal of studying the emergent behavior of these systems. While ABMS has been effectively used in many disciplines, many successful models are still run only sequentially. Relying on simple and easy-to-use languages such as NetLogo limits the possibility to benefit from more effective runtime paradigms, such as speculative Parallel Discrete Event Simulation (PDES). In this paper, we discuss a semantically-rich API allowing to implement Agent-Based Models in a simple and effective way. We also describe the critical points which should be taken into account to implement this API in a speculative PDES environment, to scale up simulations on distributed massively-parallel clusters. We present an experimental assessment showing how our proposal allows to implement complicated interactions with a reduced complexity, while delivering a non-negligible performance increase

A new approach to reversible computing with applications to speculative parallel simulation

In this thesis, we propose an innovative approach to reversible computing that shifts the focus from the operations to the memory outcome of a generic program. This choice allows us to overcome some typical challenges of "plain" reversible computing. Our methodology is to instrument a generic application with the help of an instrumentation tool, namely Hijacker, which we have redesigned and developed for the purpose. Through compile-time instrumentation, we enhance the program's code to keep track of the memory trace it produces until the end. Regardless of the complexity behind the generation of each computational step of the program, we can build inverse machine instructions just by inspecting the instruction that is attempting to write some value to memory. Therefore from this information, we craft an ad-hoc instruction that conveys this old value and the knowledge of where to replace it. This instruction will become part of a more comprehensive structure, namely the reverse window. Through this structure, we have sufficient information to cancel all the updates done by the generic program during its execution. In this writing, we will discuss the structure of the reverse window, as the building block for the whole reversing framework we designed and finally realized. Albeit we settle our solution in the specific context of the parallel discrete event simulation (PDES) adopting the Time Warp synchronization protocol, this framework paves the way for further general-purpose development and employment. We also present two additional innovative contributions coming from our innovative reversibility approach, both of them still embrace traditional state saving-based rollback strategy. The first contribution aims to harness the advantages of both the possible approaches. We implement the rollback operation combining state saving together with our reversible support through a mathematical model. This model enables the system to choose in autonomicity the best rollback strategy, by the mutable runtime dynamics of programs. The second contribution explores an orthogonal direction, still related to reversible computing aspects. In particular, we will address the problem of reversing shared libraries. Indeed, leading from their nature, shared objects are visible to the whole system and so does every possible external modification of their code. As a consequence, it is not possible to instrument them without affecting other unaware applications. We propose a different method to deal with the instrumentation of shared objects. All our innovative proposals have been assessed using the last generation of the open source ROOT-Sim PDES platform, where we integrated our solutions. ROOT-Sim is a C-based package implementing a general purpose simulation environment based on the Time Warp synchronization protocol

Aspects of Code Generation and Data Transfer Techniques for Modern Parallel Architectures

Im Bereich der Prozessorarchitekturen hat sich der Fokus neuer Entwicklungen von immer höheren Taktfrequenzen hin zu immer mehr Kernen auf einem Chip verschoben. Eine hohe Kernanzahl ermöglicht es unterschiedlich leistungsfähige Kerne anzubieten, und sogar dedizierte Kerne mit speziellen Befehlssätzen. Die Entwicklung für solch heterogene Plattformen ist herausfordernd und benötigt entsprechende Unterstützung von Entwicklungswerkzeugen, wie beispielsweise Übersetzern. Neben ihrer heterogenen Kernstruktur gibt es eine zweite Dimension, die die Entwicklung für solche Architekturen anspruchsvoll macht: ihre Speicherstruktur. Die Aufrechterhaltung von globaler Cache-Kohärenz erschwert das Erreichen hoher Kernzahlen. Hardwarebasierte Cache-Kohärenz-Protokolle skalieren entweder schlecht, oder sind kompliziert und führen zu Problemen bei Ausführungszeit und Energieeffizienz. Eine radikale Lösung dieses Problems stellt die Abschaffung der globalen Cache-Kohärenz dar. Jedoch ist es schwierig, bestehende Programmiermodelle effizient auf solch eine Hardware-Architektur mit schwachen Garantien abzubilden. Der erste Teil dieser Dissertation beschäftigt sich Datentransfertechniken für nicht-cache-kohärente Architekturen mit gemeinsamem Speicher. Diese Architekturen bieten einen gemeinsamen physikalischen Adressraum, implementieren aber keine hardwarebasierte Kohärenz zwischen allen Caches des Systems. Die logische Partitionierung des gemeinsamen Speichers ermöglicht die sichere Programmierung einer solchen Plattform. Im Allgemeinen erzeugt dies die Notwendigkeit Daten zwischen Speicherpartitionen zu kopieren. Wir untersuchen die Übersetzung für invasive Architekturen, einer Familie von nicht-cache-kohärenten Vielkernarchitekturen. Wir betrachten die effiziente Implementierung von Datentransfers sowohl einfacher als auch komplexer Datenstrukturen auf invasiven Architekturen. Insbesondere schlagen wir eine neuartige Technik zum Kopieren komplexer verzeigerter Datenstrukturen vor, die ohne Serialisierung auskommt. Hierzu verallgemeinern wir den Objekt-Klon-Ansatz mit übersetzergesteuerter automatischer software-basierter Kohärenz, sodass er auch im Kontext nicht-kohärenter Caches funktioniert. Wir präsentieren Implementierungen mehrerer Datentransfertechniken im Rahmen eines existierenden Übersetzers und seines Laufzeitsystems. Wir führen eine ausführliche Auswertung dieser Implementierungen auf einem FPGA-basierten Prototypen einer invasiven Architektur durch. Schließlich schlagen wir vor, Hardwareunterstützung für bereichsbasierte Cache-Operationen hinzuzufügen und beschreiben und bewerten mögliche Implementierungen und deren Kosten. Der zweite Teil dieser Dissertation befasst sich mit der Beschleunigung von Shuffle-Code, der bei der Registerzuteilung auftritt, durch die Verwendung von Permutationsbefehlen. Die Aufgabe der Registerzuteilung während der Programmübersetzung ist die Abbildung von Programmvariablen auf Maschinenregister. Während der Registerzuteilung erzeugt der Übersetzer Shuffle-Code, der aus Kopier- und Tauschbefehlen besteht, um Werte zwischen Registern zu transferieren. Abhängig von der Qualität der Registerzuteilung und der Zahl der verfügbaren Register kann eine große Menge an Shuffle-Code erzeugt werden. Wir schlagen vor, die Ausführung von Shuffle-Code mit Hilfe von neuartigen Permutationsbefehlen zu beschleunigen, die die Inhalte von einigen Registern in einem Taktzyklus beliebig permutieren. Um die Machbarkeit dieser Idee zu demonstrieren, erweitern wir zunächst ein bestehendes RISC-Befehlsformat um Permutationsbefehle. Anschließend beschreiben wir, wie die vorgeschlagenen Permutationsbefehle in einer bestehenden RISC-Architektur implementiert werden können. Dann entwickeln wir zwei Verfahren zur Codeerzeugung, die die Permutationsbefehle ausnutzen, um Shuffle-Code zu beschleunigen: eine schnelle Heuristik und einen auf dynamischer Programmierung basierenden optimalen Ansatz. Wir beweisen Qualitäts- und Korrektheitseingeschaften beider Ansätze und zeigen die Optimalität des zweiten Ansatzes. Im Folgenden implementieren wir beide Codeerzeugungsverfahren in einem Übersetzer und untersuchen sowie vergleichen deren Codequalität ausführlich mit Hilfe standardisierter Benchmarks. Zunächst messen wir die genaue Zahl der dynamisch ausgeführten Befehle, welche wir folgend validieren, indem wir Programmlaufzeiten auf einer FPGA-basierten Prototypimplementierung der um Permutationsbefehle erweiterten RISC-Architektur messen. Schließlich argumentieren wir, dass Permutationsbefehle auf modernen Out-Of-Order-Prozessorarchitekturen, die bereits Registerumbenennung unterstützen, mit wenig Aufwand implementierbar sind