A Mechanized Proof of a Textbook Type Unification Algorithm

Unification is the core of type inference algorithms for modern functional programming languages, like Haskell and SML. As a first step towards a formalization of a type inference algorithm for such programming languages, we present a formalization in Coq of a type unification algorithm that follows classic algorithms presented in programming language textbooks. We also report on the use of such formalization to build a correct type inference algorithm for the simply typed λ-calculus

Set-Theoretic Types for Polymorphic Variants

Polymorphic variants are a useful feature of the OCaml language whose current definition and implementation rely on kinding constraints to simulate a subtyping relation via unification. This yields an awkward formalization and results in a type system whose behaviour is in some cases unintuitive and/or unduly restrictive. In this work, we present an alternative formalization of poly-morphic variants, based on set-theoretic types and subtyping, that yields a cleaner and more streamlined system. Our formalization is more expressive than the current one (it types more programs while preserving type safety), it can internalize some meta-theoretic properties, and it removes some pathological cases of the current implementation resulting in a more intuitive and, thus, predictable type system. More generally, this work shows how to add full-fledged union types to functional languages of the ML family that usually rely on the Hindley-Milner type system. As an aside, our system also improves the theory of semantic subtyping, notably by proving completeness for the type reconstruction algorithm.Comment: ACM SIGPLAN International Conference on Functional Programming, Sep 2016, Nara, Japan. ICFP 16, 21st ACM SIGPLAN International Conference on Functional Programming, 201

The Sketch of a Polymorphic Symphony

In previous work, we have introduced functional strategies, that is, first-class generic functions that can traverse into terms of any type while mixing uniform and type-specific behaviour. In the present paper, we give a detailed description of one particular Haskell-based model of functional strategies. This model is characterised as follows. Firstly, we employ first-class polymorphism as a form of second-order polymorphism as for the mere types of functional strategies. Secondly, we use an encoding scheme of run-time type case for mixing uniform and type-specific behaviour. Thirdly, we base all traversal on a fundamental combinator for folding over constructor applications. Using this model, we capture common strategic traversal schemes in a highly parameterised style. We study two original forms of parameterisation. Firstly, we design parameters for the specific control-flow, data-flow and traversal characteristics of more concrete traversal schemes. Secondly, we use overloading to postpone commitment to a specific type scheme of traversal. The resulting portfolio of traversal schemes can be regarded as a challenging benchmark for setups for typed generic programming. The way we develop the model and the suite of traversal schemes, it becomes clear that parameterised + typed strategic programming is best viewed as a potent combination of certain bits of parametric, intensional, polytypic, and ad-hoc polymorphism

Genetic Associations with Polycystic Ovary Syndrome: The Role of The Mitochondrial Genome; A Systematic Review and Meta-analysis

BACKGROUND: Polycystic Ovary Syndrome (PCOS) remains the most common female reproductive endocrine disorder. Genetic studies have predominantly focused on the role of the nuclear genome, whilst the contribution of mitochondrial genetics in PCOS remains largely unknown. AIM: This study aims to systematically evaluate the literature regarding the associations between the mitochondrial genome and PCOS. METHODS: A literature search focused on PCOS and mitochondrial genetics was conducted on (1) MEDLINE (2) EMBASE and (3) The Cochrane Library (CENTRAL and Cochrane Reviews). Search results were screened for eligibility, and data involving genetic variants of mitochondrial DNA (mtDNA) was extracted. Quantitative data was presented in forest plots, and where this was not possible, data was analysed in a qualitative manner. Quality of studies was assessed using the Q-Genie tool. RESULTS: Of the 13,812 identified studies, 15 studies were eligible for inclusion, with 8 studies suitable for meta-analysis. Women with PCOS showed higher frequencies of a 9-bp deletion, and aberrant SNPs in the ND5, A6, and 7 tRNA-encoding genes. They also showed lower frequencies of two SNPs in the D-Loop of the genome. Women with PCOS also exhibited significantly lowered mtDNA copy number. CONCLUSION: Women with PCOS harbour genetic variants in coding and non-coding regions of the mitochondrial genome. This may disrupt the electron transport chain and lead to oxidative stress, causing apoptosis of cells and further genetic damage. However, further studies of higher quality are required to confirm these associations

Meta-F*: Proof Automation with SMT, Tactics, and Metaprograms

We introduce Meta-F*, a tactics and metaprogramming framework for the F* program verifier. The main novelty of Meta-F* is allowing the use of tactics and metaprogramming to discharge assertions not solvable by SMT, or to just simplify them into well-behaved SMT fragments. Plus, Meta-F* can be used to generate verified code automatically. Meta-F* is implemented as an F* effect, which, given the powerful effect system of F*, heavily increases code reuse and even enables the lightweight verification of metaprograms. Metaprograms can be either interpreted, or compiled to efficient native code that can be dynamically loaded into the F* type-checker and can interoperate with interpreted code. Evaluation on realistic case studies shows that Meta-F* provides substantial gains in proof development, efficiency, and robustness.Comment: Full version of ESOP'19 pape

Elaboration in Dependent Type Theory

To be usable in practice, interactive theorem provers need to provide convenient and efficient means of writing expressions, definitions, and proofs. This involves inferring information that is often left implicit in an ordinary mathematical text, and resolving ambiguities in mathematical expressions. We refer to the process of passing from a quasi-formal and partially-specified expression to a completely precise formal one as elaboration. We describe an elaboration algorithm for dependent type theory that has been implemented in the Lean theorem prover. Lean's elaborator supports higher-order unification, type class inference, ad hoc overloading, insertion of coercions, the use of tactics, and the computational reduction of terms. The interactions between these components are subtle and complex, and the elaboration algorithm has been carefully designed to balance efficiency and usability. We describe the central design goals, and the means by which they are achieved

Cogent: uniqueness types and certifying compilation

This paper presents a framework aimed at significantly reducing the cost of proving functional correctness for low-level operating systems components. The framework is designed around a new functional programming language, Cogent. A central aspect of the language is its uniqueness type system, which eliminates the need for a trusted runtime or garbage collector while still guaranteeing memory safety, a crucial property for safety and security. Moreover, it allows us to assign two semantics to the language: The first semantics is imperative, suitable for efficient C code generation, and the second is purely functional, providing a user-friendly interface for equational reasoning and verification of higher-level correctness properties. The refinement theorem connecting the two semantics allows the compiler to produce a proof via translation validation certifying the correctness of the generated C code with respect to the semantics of the Cogent source program. We have demonstrated the effectiveness of our framework for implementation and for verification through two file system implementations