Cancer diagnosis using deep learning: A bibliographic review

In this paper, we first describe the basics of the field of cancer diagnosis, which includes steps of cancer diagnosis followed by the typical classification methods used by doctors, providing a historical idea of cancer classification techniques to the readers. These methods include Asymmetry, Border, Color and Diameter (ABCD) method, seven-point detection method, Menzies method, and pattern analysis. They are used regularly by doctors for cancer diagnosis, although they are not considered very efficient for obtaining better performance. Moreover, considering all types of audience, the basic evaluation criteria are also discussed. The criteria include the receiver operating characteristic curve (ROC curve), Area under the ROC curve (AUC), F1 score, accuracy, specificity, sensitivity, precision, dice-coefficient, average accuracy, and Jaccard index. Previously used methods are considered inefficient, asking for better and smarter methods for cancer diagnosis. Artificial intelligence and cancer diagnosis are gaining attention as a way to define better diagnostic tools. In particular, deep neural networks can be successfully used for intelligent image analysis. The basic framework of how this machine learning works on medical imaging is provided in this study, i.e., pre-processing, image segmentation and post-processing. The second part of this manuscript describes the different deep learning techniques, such as convolutional neural networks (CNNs), generative adversarial models (GANs), deep autoencoders (DANs), restricted Boltzmann’s machine (RBM), stacked autoencoders (SAE), convolutional autoencoders (CAE), recurrent neural networks (RNNs), long short-term memory (LTSM), multi-scale convolutional neural network (M-CNN), multi-instance learning convolutional neural network (MIL-CNN). For each technique, we provide Python codes, to allow interested readers to experiment with the cited algorithms on their own diagnostic problems. The third part of this manuscript compiles the successfully applied deep learning models for different types of cancers. Considering the length of the manuscript, we restrict ourselves to the discussion of breast cancer, lung cancer, brain cancer, and skin cancer. The purpose of this bibliographic review is to provide researchers opting to work in implementing deep learning and artificial neural networks for cancer diagnosis a knowledge from scratch of the state-of-the-art achievements

A Fast and Robust Extrinsic Calibration for RGB-D Camera Networks

From object tracking to 3D reconstruction, RGB-Depth (RGB-D) camera networks play an increasingly important role in many vision and graphics applications. Practical applications often use sparsely-placed cameras to maximize visibility, while using as few cameras as possible to minimize cost. In general, it is challenging to calibrate sparse camera networks due to the lack of shared scene features across different camera views. In this paper, we propose a novel algorithm that can accurately and rapidly calibrate the geometric relationships across an arbitrary number of RGB-D cameras on a network. Our work has a number of novel features. First, to cope with the wide separation between different cameras, we establish view correspondences by using a spherical calibration object. We show that this approach outperforms other techniques based on planar calibration objects. Second, instead of modeling camera extrinsic calibration using rigid transformation, which is optimal only for pinhole cameras, we systematically test different view transformation functions including rigid transformation, polynomial transformation and manifold regression to determine the most robust mapping that generalizes well to unseen data. Third, we reformulate the celebrated bundle adjustment procedure to minimize the global 3D reprojection error so as to fine-tune the initial estimates. Finally, our scalable client-server architecture is computationally efficient: the calibration of a five-camera system, including data capture, can be done in minutes using only commodity PCs. Our proposed framework is compared with other state-of-the-arts systems using both quantitative measurements and visual alignment results of the merged point clouds

Human Shape from Silhouettes Using Generative HKS Descriptors and Cross-Modal Neural Networks

In this work, we present a novel method for capturing human body shape from a single scaled silhouette. We combine deep correlated features capturing different 2D views, and embedding spaces based on 3D cues in a novel convolutional neural network (CNN) based architecture. We first train a CNN to find a richer body shape representation space from pose invariant 3D human shape descriptors. Then, we learn a mapping from silhouettes to this representation space, with the help of a novel architecture that exploits the correlation of multi-view data during training time, to improve prediction at test time. We extensively validate our results on synthetic and real data, demonstrating significant improvements in accuracy as compared to the state-of-the-art, and providing a practical system for detailed human body measurements from a single image

Boosting Deep Neural Networks with Geometrical Prior Knowledge: A Survey

While Deep Neural Networks (DNNs) achieve state-of-the-art results in many different problem settings, they are affected by some crucial weaknesses. On the one hand, DNNs depend on exploiting a vast amount of training data, whose labeling process is time-consuming and expensive. On the other hand, DNNs are often treated as black box systems, which complicates their evaluation and validation. Both problems can be mitigated by incorporating prior knowledge into the DNN. One promising field, inspired by the success of convolutional neural networks (CNNs) in computer vision tasks, is to incorporate knowledge about symmetric geometrical transformations of the problem to solve. This promises an increased data-efficiency and filter responses that are interpretable more easily. In this survey, we try to give a concise overview about different approaches to incorporate geometrical prior knowledge into DNNs. Additionally, we try to connect those methods to the field of 3D object detection for autonomous driving, where we expect promising results applying those methods.Comment: Survey Pape

Highly-Optimized Radar-Based Gesture Recognition System with Depthwise Expansion Module

The increasing integration of technology in our daily lives demands the development of more convenient human–computer interaction (HCI) methods. Most of the current hand-based HCI strategies exhibit various limitations, e.g., sensibility to variable lighting conditions and limitations on the operating environment. Further, the deployment of such systems is often not performed in resource-constrained contexts. Inspired by the MobileNetV1 deep learning network, this paper presents a novel hand gesture recognition system based on frequency-modulated continuous wave (FMCW) radar, exhibiting a higher recognition accuracy in comparison to the state-of-the-art systems. First of all, the paper introduces a method to simplify radar preprocessing while preserving the main information of the performed gestures. Then, a deep neural classifier with the novel Depthwise Expansion Module based on the depthwise separable convolutions is presented. The introduced classifier is optimized and deployed on the Coral Edge TPU board. The system defines and adopts eight different hand gestures performed by five users, offering a classification accuracy of 98.13% while operating in a low-power and resource-constrained environment.Electronic Components and Systems for European Leadership Joint Undertaking under grant agreement No. 826655 (Tempo).European Union’s Horizon 2020 research and innovation programme and Belgium, France, Germany, Switzerland, and the NetherlandsLodz University of Technology

Highly accurate and fully automatic 3D head pose estimation and eye gaze estimation using RGB-D sensors and 3D morphable models

The research presented in the paper was funded by grant F506-FSA of the Auto21 Networks of Centers of Excellence Program of Canada.This work addresses the problem of automatic head pose estimation and its application in 3D gaze estimation using low quality RGB-D sensors without any subject cooperation or manual intervention. The previous works on 3D head pose estimation using RGB-D sensors require either an offline step for supervised learning or 3D head model construction, which may require manual intervention or subject cooperation for complete head model reconstruction. In this paper, we propose a 3D pose estimator based on low quality depth data, which is not limited by any of the aforementioned steps. Instead, the proposed technique relies on modeling the subject's face in 3D rather than the complete head, which, in turn, relaxes all of the constraints in the previous works. The proposed method is robust, highly accurate and fully automatic. Moreover, it does not need any offline step. Unlike some of the previous works, the method only uses depth data for pose estimation. The experimental results on the Biwi head pose database confirm the efficiency of our algorithm in handling large pose variations and partial occlusion. We also evaluated the performance of our algorithm on IDIAP database for 3D head pose and eye gaze estimation.Publisher PDFPeer reviewe

From pixels to people : recovering location, shape and pose of humans in images

Humans are at the centre of a significant amount of research in computer vision. Endowing machines with the ability to perceive people from visual data is an immense scientific challenge with a high degree of direct practical relevance. Success in automatic perception can be measured at different levels of abstraction, and this will depend on which intelligent behaviour we are trying to replicate: the ability to localise persons in an image or in the environment, understanding how persons are moving at the skeleton and at the surface level, interpreting their interactions with the environment including with other people, and perhaps even anticipating future actions. In this thesis we tackle different sub-problems of the broad research area referred to as "looking at people", aiming to perceive humans in images at different levels of granularity. We start with bounding box-level pedestrian detection: We present a retrospective analysis of methods published in the decade preceding our work, identifying various strands of research that have advanced the state of the art. With quantitative exper- iments, we demonstrate the critical role of developing better feature representations and having the right training distribution. We then contribute two methods based on the insights derived from our analysis: one that combines the strongest aspects of past detectors and another that focuses purely on learning representations. The latter method outperforms more complicated approaches, especially those based on hand- crafted features. We conclude our work on pedestrian detection with a forward-looking analysis that maps out potential avenues for future research. We then turn to pixel-level methods: Perceiving humans requires us to both separate them precisely from the background and identify their surroundings. To this end, we introduce Cityscapes, a large-scale dataset for street scene understanding. This has since established itself as a go-to benchmark for segmentation and detection. We additionally develop methods that relax the requirement for expensive pixel-level annotations, focusing on the task of boundary detection, i.e. identifying the outlines of relevant objects and surfaces. Next, we make the jump from pixels to 3D surfaces, from localising and labelling to fine-grained spatial understanding. We contribute a method for recovering 3D human shape and pose, which marries the advantages of learning-based and model- based approaches. We conclude the thesis with a detailed discussion of benchmarking practices in computer vision. Among other things, we argue that the design of future datasets should be driven by the general goal of combinatorial robustness besides task-specific considerations.Der Mensch steht im Zentrum vieler Forschungsanstrengungen im Bereich des maschinellen Sehens. Es ist eine immense wissenschaftliche Herausforderung mit hohem unmittelbarem Praxisbezug, Maschinen mit der Fähigkeit auszustatten, Menschen auf der Grundlage von visuellen Daten wahrzunehmen. Die automatische Wahrnehmung kann auf verschiedenen Abstraktionsebenen erfolgen. Dies hängt davon ab, welches intelligente Verhalten wir nachbilden wollen: die Fähigkeit, Personen auf der Bildfläche oder im 3D-Raum zu lokalisieren, die Bewegungen von Körperteilen und Körperoberflächen zu erfassen, Interaktionen einer Person mit ihrer Umgebung einschließlich mit anderen Menschen zu deuten, und vielleicht sogar zukünftige Handlungen zu antizipieren. In dieser Arbeit beschäftigen wir uns mit verschiedenen Teilproblemen die dem breiten Forschungsgebiet "Betrachten von Menschen" gehören. Beginnend mit der Fußgängererkennung präsentieren wir eine Analyse von Methoden, die im Jahrzehnt vor unserem Ausgangspunkt veröffentlicht wurden, und identifizieren dabei verschiedene Forschungsstränge, die den Stand der Technik vorangetrieben haben. Unsere quantitativen Experimente zeigen die entscheidende Rolle sowohl der Entwicklung besserer Bildmerkmale als auch der Trainingsdatenverteilung. Anschließend tragen wir zwei Methoden bei, die auf den Erkenntnissen unserer Analyse basieren: eine Methode, die die stärksten Aspekte vergangener Detektoren kombiniert, eine andere, die sich im Wesentlichen auf das Lernen von Bildmerkmalen konzentriert. Letztere übertrifft kompliziertere Methoden, insbesondere solche, die auf handgefertigten Bildmerkmalen basieren. Wir schließen unsere Arbeit zur Fußgängererkennung mit einer vorausschauenden Analyse ab, die mögliche Wege für die zukünftige Forschung aufzeigt. Anschließend wenden wir uns Methoden zu, die Entscheidungen auf Pixelebene betreffen. Um Menschen wahrzunehmen, müssen wir diese sowohl praezise vom Hintergrund trennen als auch ihre Umgebung verstehen. Zu diesem Zweck führen wir Cityscapes ein, einen umfangreichen Datensatz zum Verständnis von Straßenszenen. Dieser hat sich seitdem als Standardbenchmark für Segmentierung und Erkennung etabliert. Darüber hinaus entwickeln wir Methoden, die die Notwendigkeit teurer Annotationen auf Pixelebene reduzieren. Wir konzentrieren uns hierbei auf die Aufgabe der Umgrenzungserkennung, d. h. das Erkennen der Umrisse relevanter Objekte und Oberflächen. Als nächstes machen wir den Sprung von Pixeln zu 3D-Oberflächen, vom Lokalisieren und Beschriften zum präzisen räumlichen Verständnis. Wir tragen eine Methode zur Schätzung der 3D-Körperoberfläche sowie der 3D-Körperpose bei, die die Vorteile von lernbasierten und modellbasierten Ansätzen vereint. Wir schließen die Arbeit mit einer ausführlichen Diskussion von Evaluationspraktiken im maschinellen Sehen ab. Unter anderem argumentieren wir, dass der Entwurf zukünftiger Datensätze neben aufgabenspezifischen Überlegungen vom allgemeinen Ziel der kombinatorischen Robustheit bestimmt werden sollte